Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M08
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   1.6  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    24   6.3  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 77  D*KKINVETHNPSTDL*FVHY-FFCVLNEISTIVHRYLPSSVTRM-YRHKTQIKW 235
           D K   VE H PS D  F H+ ++ V++      H  + S+V  + YRH   + +
Sbjct: 802 DDKDKKVEGHRPSQDPTFSHHEYYPVISTTYPFFHVDVTSAVVDIQYRHVLDVNY 856


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 IVHRYLPSSVTRMYRHKTQIK 232
           IVH+YL S+V RM   K  ++
Sbjct: 308 IVHKYLASNVVRMVHGKKALE 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,598
Number of Sequences: 5004
Number of extensions: 13276
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)