Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M08
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   2.6  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               27   3.4  
SB_36266| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   4.6  
SB_20925| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 150 CLTKFQ---QSCIDTYLVRLQECIVIRRK*NGTC 242
           C+ ++Q   ++CI  Y +RL+ CI+  +K   TC
Sbjct: 59  CIIRYQIRLETCIIRYQIRLETCIIRYQKRQETC 92



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = +3

Query: 150 CLTKFQ---QSCIDTYLVRLQECIV 215
           C+T++Q   ++CI  Y +RL+ CI+
Sbjct: 48  CITRYQIRLETCIIRYQIRLETCII 72



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 126 DLCIIFFVCLTKFQQSCIDTYLVRLQECIV 215
           + CII +    K Q++CI  Y +RL+ CI+
Sbjct: 79  ETCIIRY---QKRQETCIIRYQIRLETCII 105


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 244 LHVPFYLRLMTIHSCNRTR*VSMHDC 167
           LH    LR +T+H C   R ++MH+C
Sbjct: 7   LHECVTLRSITLHECVTFRSITMHEC 32



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 244 LHVPFYLRLMTIHSCNRTR*VSMHDC*NF 158
           LH     R +T+H C   R +++H+C  F
Sbjct: 73  LHERMTFRSITLHECVTFRSITLHECVTF 101


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 126 DLCIIFFVCLTKFQQSCIDTYLVRLQEC 209
           DL  + F+CL  F Q C + Y     EC
Sbjct: 82  DLPAVHFLCLHSFHQPCFEGYAENDNEC 109


>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 105 TIRPQTCDLCIIFFVCLTKFQQSC 176
           T+RP  CD+C    V ++ F  SC
Sbjct: 260 TLRPYVCDVCDYRLVLISLFDYSC 283


>SB_36266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = +3

Query: 150 CLTKFQ---QSCIDTYLVRLQECIV 215
           C+T++Q   ++CI  Y +RL+ CI+
Sbjct: 24  CITRYQIRLETCIIRYQIRLETCII 48



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 150 CLTKFQ---QSCIDTYLVRLQECIVIRRK*NGTC 242
           C+ ++Q   ++CI  + +RL+ CI+  +K   TC
Sbjct: 35  CIIRYQIRLETCIIRHQIRLETCIIRYQKRQETC 68



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 126 DLCIIFFVCLTKFQQSCIDTYLVRLQECIV 215
           + CII +    K Q++CI  Y +RL+ CI+
Sbjct: 55  ETCIIRY---QKRQETCIIRYQIRLETCII 81


>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 618

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 210 YILVTELGRYRCTIVEISLSTQ 145
           ++L  +LGRY CT++ + +S Q
Sbjct: 254 FVLTWKLGRYWCTLIRLFISPQ 275


>SB_20925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 IRPQTC-DLCIIFFVCLTKFQQSCIDTYLVRLQECIVIRRK 227
           IRPQ   + CII +    K  ++CI  Y +RL+ CI+  +K
Sbjct: 99  IRPQKRPETCIIRY---QKRPETCIIRYQIRLETCIIRYQK 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,477,613
Number of Sequences: 59808
Number of extensions: 100444
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)