Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M08
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-4|AAC67411.1|  339|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>AF098504-4|AAC67411.1|  339|Caenorhabditis elegans Hypothetical
           protein T27C10.3 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 73  NXLKKN*CRNSQSVHRLVICALFFLCA 153
           N +K N  R  Q++H+L+ C+ FF+ A
Sbjct: 132 NFIKNNLPRFMQTLHKLIACSNFFIQA 158


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 132 CIIFFVCLTKFQQSCIDTYLVRLQECIVIRR 224
           C +F     K + +C+  Y +     I+IRR
Sbjct: 103 CFVFLPVFHKMKSTCLHEYFIHRYNSILIRR 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,855,471
Number of Sequences: 27780
Number of extensions: 77404
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)