Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M07
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0442 + 3495333-3496484 27 0.32
09_03_0051 + 11902322-11903125 31 1.2
07_03_1262 - 25273421-25273909,25273966-25274211 31 1.2
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130... 31 1.2
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878... 29 2.7
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 2.7
01_06_0462 + 29561928-29561957,29562101-29562317,29562412-295624... 29 2.7
08_01_0531 - 4604556-4604582,4604829-4604921,4605381-4605572,460... 29 3.5
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 4.7
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 6.2
02_04_0270 - 21439788-21441680 28 6.2
12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804... 28 8.2
11_04_0216 - 14954047-14956098 28 8.2
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845... 28 8.2
>12_01_0442 + 3495333-3496484
Length = 383
Score = 27.1 bits (57), Expect(2) = 0.32
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 198 RGCVRLSAAEKRR-RTNYYYRSGKPNKC-LTLKGFLILMQYSANARRNTCGAPAVPP 362
R C+ A E + R+ RS N C + L+ L ++ A A R T APA PP
Sbjct: 118 RRCLNCDAVETPQWRSGPMGRSTLCNACGVRLRAVGSLPEHRAPAARTTTAAPASPP 174
Score = 24.2 bits (50), Expect(2) = 0.32
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 336 TCGAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTK 458
T APA PP Q S + + + P KR+ + ST+
Sbjct: 215 TAPAPAPPPPPPQPASPKTKTKAKAKKPKRKRSCVHCGSTE 255
>09_03_0051 + 11902322-11903125
Length = 267
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +2
Query: 308 AILCERAKKHVW--RACGPALKPSASVLPRPRSSYSLYTVSQAYHYLFRQHEKSLQPLID 481
A+L RA++ + R G + ++S L R RSS+S+++ A Y F H + +P
Sbjct: 35 AVLSSRARESLSPRRGGGGLARRASSALERVRSSFSIFSFPSASFYAF--HPDAAEP--- 89
Query: 482 EYRQTTDEQRS--ACPPSS 532
R T +RS A PP++
Sbjct: 90 --RTPTPRKRSPVAAPPAA 106
>07_03_1262 - 25273421-25273909,25273966-25274211
Length = 244
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +2
Query: 344 RACGPALKPSASVLPRPRSSYSLYTVSQAYHYLFRQHEKSLQPLIDEYRQTTDEQRSACP 523
R C A+ A+VLP + +L + A H +FR +L + D R ++ R + P
Sbjct: 166 REC-EAMMAEAAVLPAEAAPEAL--AAAAEHGIFRNTVAALLTMEDVRRGSSTHGRHSLP 222
Query: 524 PSSLLGNNWFDNLQ 565
P +L ++W + Q
Sbjct: 223 PLTLPDSDWLRSFQ 236
>02_04_0046 +
19211961-19212231,19212651-19212706,19212947-19213011,
19213138-19213212,19213305-19213383,19213591-19213629,
19213712-19213820,19214334-19214452,19215282-19215401,
19215846-19216232
Length = 439
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 389 RPRSSYSLYTVSQAYHYLFRQHEKSLQPLIDEYRQTTDEQRSACPPS 529
RP + + +VSQ+ + + E+ LQ L + TTD S PPS
Sbjct: 346 RPAHHFQIASVSQSLNIPLSELEEKLQMLETSLKDTTDASSSDKPPS 392
>08_02_1544 +
27787089-27787172,27787448-27787612,27787741-27787850,
27788360-27788513,27788643-27788937,27788996-27789798
Length = 536
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 135 YSFDEVPFLNRDNL*NRSPTTRGCVRLSAAEKRRRTNYYYRSGKPNKC 278
YS+ +PF DNL +PT +L ++++R+ Y + P KC
Sbjct: 48 YSYYSLPFCRPDNLTESAPT---LWQLLHGDRQQRSPYQFEMRVPKKC 92
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 336 TCGAPAVPPLSRQHPSCRDRARPT 407
TCG PA P + Q S DRA PT
Sbjct: 343 TCGTPAPAPPAGQPSSAEDRATPT 366
>01_06_0462 +
29561928-29561957,29562101-29562317,29562412-29562494,
29563065-29563124,29563526-29563634,29563732-29563784,
29564270-29564350,29564431-29564547
Length = 249
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -2
Query: 559 IIKPVVA*QARRRAGGSLLVRGLAVLIDEGLKRFFVLSE 443
++ +A +ARRRAGG L R LA L DE R F ++E
Sbjct: 51 LLPATLAARARRRAGGRLTFRELADLADE--SRCFSVNE 87
>08_01_0531 -
4604556-4604582,4604829-4604921,4605381-4605572,
4605800-4606390
Length = 300
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 299 NTNAILCER-AKKHVWRACGPALKPSASVLPR 391
+ A+LC A+ WRA GP L P+AS+ R
Sbjct: 60 HARALLCRGCARPTPWRAAGPRLGPTASLCER 91
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 367 AVSIRLAATALVLLSLHREPSVPLSFQTARKISSAPHR*VPPDHGRATIRLP 522
A S R AATA +L + R P PL+ A +A P G+ + +P
Sbjct: 44 ATSTRFAATAPILRLVQRRPRAPLTAARAASPDAATGARSPSSGGQMLVFVP 95
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 357 PPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMSTARPRTSN 509
PPL + HP+ D TP K T TK+ + +S S P T N
Sbjct: 198 PPLEQNHPNNTDVCSQLPKTPQTKSTV--EHETKSNINNTSTSKGAPPTEN 246
>02_04_0270 - 21439788-21441680
Length = 630
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 441 FSDS--TKNLFSPSSMSTARPRTSND 512
FSDS T+N F P ST R RT+ND
Sbjct: 375 FSDSEVTRNGFEPKWRSTTRGRTTND 400
>12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,
80420-80924,80999-81181,81282-81373,81491-81764,
81840-82053,82158-82228,82403-82509,82967-83016,
83125-83208,84060-84119,84196-84285,84824-84900,
85022-85106,85224-85304,85492-85595,85793-85842,
86625-86731,87603-87725,87838-87889,88090-88202,
88265-88405,88513-88602
Length = 969
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 361 P*AVSIRLAATALVLLSLHREPSVPL-SFQTARKISSAP 474
P ++S+ LAA L+ LHR+P+ L S++ A +I P
Sbjct: 889 PASISVSLAARQLMYRLLHRDPANRLGSYEGANEIKGHP 927
>11_04_0216 - 14954047-14956098
Length = 683
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/75 (26%), Positives = 29/75 (38%)
Frame = +2
Query: 380 VLPRPRSSYSLYTVSQAYHYLFRQHEKSLQPLIDEYRQTTDEQRSACPPSSLLGNNWFDN 559
VLP P Y + L Q K LQP +E +Q D + A P L + +
Sbjct: 408 VLPEPEMQDQEYKDVEPVKELQDQEYKFLQPEEEEEQQEQDSENDAQPEEQLQEQDCDNG 467
Query: 560 LQDLSEFYEDDQALR 604
+Q E + +R
Sbjct: 468 VQPEEEEESQEHEMR 482
>11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,
84559-85063,85136-85318,85419-85510,85628-85901,
85977-86190,86295-86365,86540-86646,87104-87153,
87262-87345,88197-88256,88333-88422,88961-89037,
89160-89244,89362-89442,89630-89733,89931-89980,
90764-90870,91743-91865,91978-92029,92230-92342,
92404-92544,92656-92745
Length = 969
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 361 P*AVSIRLAATALVLLSLHREPSVPL-SFQTARKISSAP 474
P ++S+ LAA L+ LHR+P+ L S++ A +I P
Sbjct: 889 PASISVSLAARQLMYRLLHRDPANRLGSYEGANEIKGHP 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,261
Number of Sequences: 37544
Number of extensions: 330882
Number of successful extensions: 1232
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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