Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M07
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-5|CAB54428.1| 237|Caenorhabditis elegans Hypothetical ... 31 0.79
AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical ... 31 0.79
AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 29 4.2
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 29 4.2
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 29 4.2
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 29 4.2
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 29 4.2
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 29 4.2
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 29 4.2
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 29 4.2
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 28 7.4
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AL110487-5|CAB54428.1| 237|Caenorhabditis elegans Hypothetical
protein Y39E4B.6 protein.
Length = 237
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 170 QLIKQVADNKRLCQTVGCGKETENKLLLQIREAEQVSDFERILNTNAILCERAKKHV 340
+L+++ D + L + +G KETEN+ L + A +S E + +T AI+ ++K V
Sbjct: 179 ELLERDQDTQVLTRELG-SKETENRHLRSLLSAHGISPDEPVTSTTAIVVGQSKSPV 234
>AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical
protein Y71H2AM.9 protein.
Length = 443
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +2
Query: 365 KPSASVLPRPRSSYSLYTVSQAYHYLFRQH------EKSLQPLIDEYRQTTDEQR 511
KP S+ +S++ LYT+++ YH + H E +PL+ ++ TD +R
Sbjct: 92 KPVLSLTHHGKSNHQLYTLTEVYHKALKVHGSTEALEAHRRPLVAMRKELTDAER 146
>AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical
protein E01A2.7 protein.
Length = 367
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 263 EAEQVSDFERILNTNAILCERAKKHVWRACGPALKPSASVLPRPRSSYSLYTVSQAYHYL 442
E +++S+ E + + + + H+W C P +K +A L S +LY SQ
Sbjct: 253 EIQKISEIETLTGCDNFYVD-TQDHLWAGCHPVVKDAAGHLGNVSDS-TLYGPSQVLRVS 310
Query: 443 FRQHEKSLQ 469
F + K+ +
Sbjct: 311 FSKDLKTAE 319
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 232 LFSAADSLTQPLVVGDLFYKLSRFRKGTSSK 140
LF+ SL P+V G L Y +K TSS+
Sbjct: 232 LFTVIPSLILPIVTGTLIYFFKTLKKSTSSR 262
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 446 RQHEKSLQPLIDEYRQTTDEQRSACP 523
R+ E + P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 446 RQHEKSLQPLIDEYRQTTDEQRSACP 523
R+ E + P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 500 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 634
DE + +LL ++W S+ + D A+RKE+E TDR+
Sbjct: 76 DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 500 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 634
DE + +LL ++W S+ + D A+RKE+E TDR+
Sbjct: 76 DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 446 RQHEKSLQPLIDEYRQTTDEQRSACP 523
R+ E + P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 500 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 634
DE + +LL ++W S+ + D A+RKE+E TDR+
Sbjct: 76 DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 446 RQHEKSLQPLIDEYRQTTDEQRSACP 523
R+ E + P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
C05C10.2b protein.
Length = 1553
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 206 CQTVGCGKETENKLLLQIREAEQVSDFERILNTNAILCERAKK 334
C TV + +E ++++ E++SDF ++ N + RAK+
Sbjct: 1394 CGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQ 1436
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
C05C10.2a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 206 CQTVGCGKETENKLLLQIREAEQVSDFERILNTNAILCERAKK 334
C TV + +E ++++ E++SDF ++ N + RAK+
Sbjct: 1394 CGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQ 1436
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 557 NLQDLSEFYEDD-QALRKEVETITDRIIAAEVKASEVKQ 670
N+ +F + D + L+KEV+ +T I E KAS++K+
Sbjct: 85 NITQAVDFAQKDLEHLQKEVDKVTKATIELEDKASKIKE 123
>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
protein K04D7.5b protein.
Length = 1287
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 434 HYLFRQHEKSLQPLIDEYRQTTDEQRSAC--PPSSLLGNNWFDNLQDLSEFYEDDQALRK 607
H + + EK + L+ + + C PP+S G W+ Q+ E+ + LRK
Sbjct: 577 HQIMQAAEKGVCKLVLPLKSWQESDTPICQWPPASQPG--WYRRFQETFNVTEERKILRK 634
Query: 608 EVETI 622
V T+
Sbjct: 635 HVSTM 639
>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
protein K04D7.5a protein.
Length = 1338
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 434 HYLFRQHEKSLQPLIDEYRQTTDEQRSAC--PPSSLLGNNWFDNLQDLSEFYEDDQALRK 607
H + + EK + L+ + + C PP+S G W+ Q+ E+ + LRK
Sbjct: 577 HQIMQAAEKGVCKLVLPLKSWQESDTPICQWPPASQPG--WYRRFQETFNVTEERKILRK 634
Query: 608 EVETI 622
V T+
Sbjct: 635 HVSTM 639
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,708,903
Number of Sequences: 27780
Number of extensions: 274093
Number of successful extensions: 1096
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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