Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M07
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.91 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.91 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.91 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 569 LSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSD 679
           +SE +E D  L + +E +TD++     +    KQ++D
Sbjct: 345 MSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTD 381


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 371 SASVLPRPRSSYSLYTVSQAYHYLFRQHEKSLQPLIDEYRQTTDEQR 511
           SAS +    SSYSL    Q   +L  +    +Q +I+E  Q+T+++R
Sbjct: 191 SASAMVLGLSSYSLTEFQQRRAFLETRQSLEVQLVIEE--QSTEQER 235


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 569 LSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSD 679
           +SE +E D  L + +E +TD++     +    KQ++D
Sbjct: 345 MSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTD 381


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 100 LLNKKNICIYINIVLTK 150
           LL K+NICI I   L K
Sbjct: 303 LLGKRNICIAIKEKLVK 319


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 187 RRQQEAVSDCRLR 225
           RRQ+EA  +CR R
Sbjct: 442 RRQREAAGNCRKR 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,584
Number of Sequences: 438
Number of extensions: 3109
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)