Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M07
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    31   0.56 
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    30   1.3  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   2.2  
At5g51840.1 68418.m06427 expressed protein                             29   3.0  
At4g28500.1 68417.m04077 no apical meristem (NAM) family protein...    28   5.2  
At3g20570.1 68416.m02604 plastocyanin-like domain-containing pro...    28   5.2  
At3g29410.1 68416.m03695 terpene synthase/cyclase family protein...    28   6.8  
At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein co...    28   6.8  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    28   6.8  

>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 246 YYYRSGKPNKCLTLKGFLILMQYSANARRNTCGA----PAVPPLSRQHPSCRD 392
           Y  + GKP  CLT K F IL   S NA+ +   A     AV PL + + +  D
Sbjct: 158 YGTKDGKPADCLTRKHFYILQPVSGNAKYSKSQANESSNAVQPLQKAYVNLDD 210


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 357  PPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMSTARPRTSNDPP 518
            PP+ ++  S  +++ P+ STP  +  T   ++++   +P S++TA P      P
Sbjct: 1236 PPVEKEETSLEEKSDPS-STPNTETATSTENTSQTTTTPESVTTAPPEPITTAP 1288


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
 Frame = +3

Query: 207 VRLSAAEKRRRTN--YYYRSGKPNKCLTLKGFLILMQYSANARRNTCGAPAVPPLSRQHP 380
           VR S + +RRR +  +  RS  P +           Q  A +RR    +P+ P   R+ P
Sbjct: 266 VRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRR--SPSPPARRRRSP 323

Query: 381 SCRDRARPTLSTP*AKRTTIFSDSTKNLFSPS-------SMSTARPRTSNDPPARRR 530
           S   R R + S P A+R    +   +   SPS       S   AR R S  PPARRR
Sbjct: 324 SPPARRRRSPSPP-ARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARRR 379


>At5g51840.1 68418.m06427 expressed protein
          Length = 245

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 599 LRKEVETITDRIIAAEVKASEVKQRSDXRSK 691
           LRK++E  T+RI AA++K  E ++  +  SK
Sbjct: 77  LRKKIEVSTERIHAAKLKEEEARKAFEAASK 107


>At4g28500.1 68417.m04077 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 305

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +2

Query: 446 RQHEKSLQPLIDEYRQTTDEQRSAC--PPSSLLGNNWFDNLQDL----SEFYEDDQALRK 607
           R   K L PLIDE+ +T D +   C   P  L G N    ++      S+ Y      R+
Sbjct: 81  RDDAKKLHPLIDEFIRTIDGENGICYTHPEKLPGVNKDGTVRHFFHRPSKAYTTGTRKRR 140

Query: 608 EVETITD 628
           +V T +D
Sbjct: 141 KVHTDSD 147


>At3g20570.1 68416.m02604 plastocyanin-like domain-containing
           protein
          Length = 203

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 120 MYIHKYSFDEVPFLNRD---NL*NRSPTTRGCVRLSAAEKRRRTNYYYRSGKPNKCLTLK 290
           +++++ + D V  + RD   +    SPT +     ++        YY+ SG  + C   +
Sbjct: 63  LFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGPYYFISGNKDNCKKNE 122

Query: 291 GFLILMQYSANARRNTCGAPAVP 359
             ++++    +  +NT  +P  P
Sbjct: 123 KLVVIVMADRSGNKNTASSPPSP 145


>At3g29410.1 68416.m03695 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana], contains Pfam profile: PF01397
           terpene synthase family
          Length = 603

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 362 LKPSASVLP-RPRSSYSLYTVSQAYHYLFRQHEKSLQPLIDEYRQTTDEQRSACPPSSLL 538
           LK + S+ P R   S SL +     HYLFR              +T+ +  S  P +   
Sbjct: 22  LKTNFSLFPCRLLQSQSLSSKKSTKHYLFRVKA-----------ETSGDLESTRPLTYFS 70

Query: 539 GNNWFDNLQDLSEFYEDDQALRKEVETI 622
            + W D+   +S    + +AL KE+ET+
Sbjct: 71  PSYWGDHFLSVSIDDSEFEALEKEIETV 98


>At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 637

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
 Frame = +2

Query: 425 QAYHYLFRQHEKS-------------LQPLIDEYRQTTDEQRSACPPSSLLG------NN 547
           +A H+L  QH KS             +  L  E+ Q     R    P S+ G      N+
Sbjct: 89  RAMHFLISQHSKSAKLVLAQHLMQIAMARLEKEFFQILSSNRDQLDPESVSGHSSISSNS 148

Query: 548 WFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVK 667
            F+++   S+  E+D+ L+K  ETIT    AA +  S++K
Sbjct: 149 EFEDVMQSSDDEEEDE-LKKAGETITKVEKAAALVMSDLK 187


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 536 LGNNWFDNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSD 679
           +GNN    +++  E       L KE+  IT+R+ A E K   ++Q SD
Sbjct: 446 IGNNGVMIIEEEKENGSRKDMLVKEISEITERLNAIESKGELLQQISD 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,120
Number of Sequences: 28952
Number of extensions: 248928
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)