Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M05
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   8e-18
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_7964| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 39/61 (63%), Positives = 48/61 (78%)
 Frame = +3

Query: 111 EVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLTVDQWKT 290
           EV D SDGCGAK   +IVS+KF+GKPLL RH++V   L+EE+KTIHAF+QKT T +QW  
Sbjct: 1   EVKDLSDGCGAKIEAVIVSEKFQGKPLLQRHKMVYGCLEEEMKTIHAFSQKTYTPEQWAK 60

Query: 291 Q 293
           Q
Sbjct: 61  Q 61


>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -3

Query: 560 VFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGA-----ETLTVNKLSTAVNIVLLM 396
           V T FIT+ELLR RL   A F  T   S     F G+     E   V    T +NI+L++
Sbjct: 79  VKTDFITIELLRGRLRYTANFGSTANISGFHEVFMGSHLADNEWHQVELRRTGLNILLIL 138


>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 584 MWTAGSCGVFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGAETLTVNKLSTAVNIV 405
           +WT  +  + T    ++L+   +TAIAV P         M  P   T+ +   S  + +V
Sbjct: 429 LWTGSTVVMPTHSAVIQLVHTHVTAIAVTPEMGAAVQISMNVPWERTVVMPTHSAVIQLV 488


>SB_7964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 108 EEVTDESDGCGAKFSVLIVSDKFKGKP 188
           EE+     GCG+   V I+ DKF G P
Sbjct: 53  EELEQHFHGCGSVNRVTILCDKFSGHP 79


>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 629 GSNGMVSCRS-THGKCMWTAGSCGVFT 552
           G  G + C+  T G   WT G+C VFT
Sbjct: 153 GLAGTIICKLITGGNFSWTGGACSVFT 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,652,584
Number of Sequences: 59808
Number of extensions: 508270
Number of successful extensions: 1474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)