Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M05
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ...    71   1e-12
At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabol...    44   8e-05
At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to mev...    43   2e-04
At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to mev...    43   2e-04
At1g55805.1 68414.m06392 BolA-like family protein contains Pfam ...    38   0.005
At5g17560.1 68418.m02060 BolA-like family protein contains Pfam ...    33   0.15 
At4g01510.1 68417.m00194 transmembrane ARV1-like family protein ...    29   2.4  
At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein ...    28   5.5  
At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6    28   7.2  
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER...    27   9.6  
At1g31910.1 68414.m03921 GHMP kinase family protein contains TIG...    27   9.6  

>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 93

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = +3

Query: 111 EVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFT-QKTLTVDQWK 287
           EV D S GCG+ F V +VS++F+GK LL RHR+VN  L+EE+K IHA + +K  T  QWK
Sbjct: 21  EVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALEEEMKEIHALSIKKAQTPQQWK 80


>At4g26500.1 68417.m03813 BolA-like family protein / Fe-S metabolism
           associated domain-containing protein similar to SufE
           protein [Erwinia chrysanthemi] GI:11342550; contains
           Pfam profiles PF02657: Fe-S metabolism associated
           domain, PF01722: BolA-like protein
          Length = 371

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 21/38 (55%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +3

Query: 147 FSVLIVSDKFKGKPLLARHRLVNTLLQEELKT-IHAFT 257
           F++ IVSD F+GK L+ RHRL+  LLQ+ELK+ +HA +
Sbjct: 325 FNLRIVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALS 362


>At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to
           mevalonate kinase [Arabidopsis thaliana]
           SWISS-PROT:P46086
          Length = 378

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 439 VSVSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIK 549
           V   APGK+IL GEH+VV+G TA+A ++ L + + ++
Sbjct: 3   VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLR 39


>At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to
           mevalonate kinase [Arabidopsis thaliana]
           SWISS-PROT:P46086
          Length = 378

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 439 VSVSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIK 549
           V   APGK+IL GEH+VV+G TA+A ++ L + + ++
Sbjct: 3   VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLR 39


>At1g55805.1 68414.m06392 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 160

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 147 FSVLIVSDKFKGKPLLARHRLVNTLLQEELKT-IHAFT 257
           F+V IVS  F+G  L+ RHRLV  LL+EEL T +HA +
Sbjct: 110 FNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALS 147


>At5g17560.1 68418.m02060 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 177

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 84  KI*KCSNIEEVT-DESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELK-TIHAFT 257
           KI +  N E VT  +  G G    + +VS  F+G+  + R R+V   + EEL+  +HA  
Sbjct: 108 KIKEQLNAESVTVTDMSGDGRHVCINVVSSAFEGQSAVNRQRMVYKAIWEELQNVVHAVD 167

Query: 258 QKT 266
           Q T
Sbjct: 168 QMT 170


>At4g01510.1 68417.m00194 transmembrane ARV1-like family protein
           contains similarity to ARV1 [Homo sapiens]
           gi|12044055|gb|AAG47671
          Length = 252

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +3

Query: 93  KCSNIEEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIH 248
           KC N EEV DE   C     ++I  D    K    RH L N + QE     H
Sbjct: 55  KCENCEEVADEYVECEL---LIIFIDLILHKTKAYRHLLYNVVNQESANVQH 103


>At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 105

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 485 ECSPCKMTFPGAETLTVNKLSTAVNIV 405
           EC  CK+T PG +T+ ++  S   NI+
Sbjct: 48  ECPHCKITAPGLKTMQIHHESKHPNII 74


>At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
          Length = 285

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 519 PRPKELHSDKGSKHSTRTSSPHTFA 593
           P+P  LH  K + HS   S P TF+
Sbjct: 16  PKPLSLHQTKPTSHSLSLSKPTTFS 40


>At4g05310.1 68417.m00809 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 415

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 659 SLGWNRLLTVGSNGMVSCRSTHGKCMWTAGS 567
           S  WNR+L   +  MVS R TH    +T GS
Sbjct: 374 SFEWNRVLPAETVYMVSGRDTHFASSFTRGS 404


>At1g31910.1 68414.m03921 GHMP kinase family protein contains
           TIGRFAM profile TIGR01219: phosphomevalonate kinase;
           contains Pfam PF00288: GHMP kinases putative ATP-binding
           protein domain; similar to Phosphomevalonate kinase (EC
           2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
          Length = 505

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 439 VSVSAPGKVILHGEHSVVYGKTA-IAVSLGLRSSIVIKEVNTPHEP 573
           V  SAPGKV++ G + V+    A + +S   R   ++K +N   +P
Sbjct: 3   VVASAPGKVLMTGGYLVLEKPNAGLVLSTNARFYAIVKPINEEVKP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,991
Number of Sequences: 28952
Number of extensions: 350068
Number of successful extensions: 892
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)