Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M04
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.001
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.007
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.021
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.028
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.037
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.037
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 31 0.064
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.15
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.20
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.20
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 0.79
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 0.79
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 1.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 5.6
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 7.3
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 7.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 7.3
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 7.3
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 24 9.7
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 24 9.7
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.7
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 3e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 152 KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
K N + +P FAFI FEN A++A +++NG+ G TLKVE
Sbjct: 55 KKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATLK 280
K LE F K+GK+ + + G FAF+ ++ + AE+A +++NGTE+ G +
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179
Query: 281 VE 286
V+
Sbjct: 180 VD 181
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.001
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
++Q E +KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 529 LEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
Score = 29.1 bits (62), Expect = 0.34
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF +I++ N A +A MNG ++ G ++V
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 34.7 bits (76), Expect = 0.007
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LE F YGK+ V L G AF+ F+NL+ A A + G + G + ++ S+
Sbjct: 46 LEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSK 104
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.1 bits (72), Expect = 0.021
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
K+ +ER F +YG + + V N G+AF+ FE ++ + A A G + G +
Sbjct: 112 KESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRI 171
Query: 278 KVEISR 295
V++ R
Sbjct: 172 VVDVER 177
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.7 bits (71), Expect = 0.028
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 146 YGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
YG+L SV V + GFAF EF +EA +A A+ T +LG L ++
Sbjct: 744 YGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQ 794
Score = 31.1 bits (67), Expect = 0.085
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
GF F+EF++ A A AMNG + G L++++S +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
Score = 28.3 bits (60), Expect = 0.60
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
L+ F +G+L V + + NP GFA+I+F + +A A ++ G L V
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 32.3 bits (70), Expect = 0.037
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
+ Q L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.3 bits (70), Expect = 0.037
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
GF F+E E+ ++A D + G E +G+ + VE +R
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPAR 73
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.064
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 137 FDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
F +YG + + + + G AF+ +EN+Q+A AC ++G + L V
Sbjct: 32 FGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.15
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.9 bits (64), Expect = 0.20
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
GF F EF+N +AE A S ++G + G L + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.9 bits (64), Expect = 0.20
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNG--TEMLGATLKVEISRK 298
FAF+E+E+ ++AEDA ++G E G L+VE +++
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQ 86
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 0.79
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
G+A++ F N+++ E A +N T + G ++ S++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 0.79
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 176 LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
L P G AF+ F N ++ + A +NG + + V+ +R
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
Score = 27.9 bits (59), Expect = 0.79
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
GF F+ F N ++ A MNG ++ TL V+
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
LE F ++GK+ S V + +AFIEF+N + E A M + + + V+
Sbjct: 260 LELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDF 319
Query: 290 SR 295
S+
Sbjct: 320 SQ 321
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 236 THLPPPASSQIL*KRNLGDLVLPKLSLVF 150
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 140 DKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 281 EKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 137 FDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
F KYGK+ + P FAF+ F++ Q A A + L+VE
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF ++FEN +A + +NG G L++
Sbjct: 321 GFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+AFIEFE+L A M+ + G L+ ++
Sbjct: 148 YAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 216 KFSNSMKAKPGGFSATQTEFSFPY 145
KF++S K F+ T+TE S PY
Sbjct: 280 KFNSSFKTSNDFFTFTKTEESSPY 303
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.2 bits (50), Expect = 9.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
L+ F G +N V + + P GFA+IEF +A +NG+ + LKV
Sbjct: 71 LQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGSMLHERPLKVTP 129
Query: 290 SR 295
R
Sbjct: 130 KR 131
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
+AF+EF+ ++A++A MN + + ++V
Sbjct: 48 YAFVEFDEPEDAKEAMENMNYSILCDRCIRV 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,810
Number of Sequences: 5004
Number of extensions: 19370
Number of successful extensions: 69
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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