Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M04
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 71 5e-13
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 44 8e-05
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 42 2e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 40 7e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.021
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 35 0.028
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.028
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 35 0.028
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.037
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.049
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.065
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.065
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.26
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 30 1.1
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 1.1
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 1.4
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.4
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 3.2
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 3.2
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 3.2
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 3.2
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 3.2
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 28 4.3
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 5.6
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 27 5.6
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 27 7.5
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 70.9 bits (166), Expect = 5e-13
Identities = 28/56 (50%), Positives = 43/56 (76%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
LER F+K+G+L+ VWVA NPPGFAF+E+E+ ++AE+A ++G + T++VE S
Sbjct: 20 LERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
+ER F+ +G L VWVA NPPGFAF FE+ ++AEDA ++G + G +VE+++
Sbjct: 18 IEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
+E F YG L VWVA NPPGFAF F++ ++AEDA ++G + G ++VE+++
Sbjct: 48 IENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAK 104
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
+ R F YG+L + + N + F+EFE+ ++A+DA NG EMLG + VE SR
Sbjct: 19 VRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECNGKEMLGERILVEHSR 72
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
+ F YG++ ++ V L+ G+A +E+E +EA+ A A+NG EMLG + V+
Sbjct: 309 IHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/62 (29%), Positives = 38/62 (61%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+++ +E+ YGK+ + + G+ F+EF++ ++AEDA +NG +++G + VE
Sbjct: 700 VRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEF 756
Query: 290 SR 295
S+
Sbjct: 757 SK 758
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
L+ F KYGK+ G +EFE+ + A ++ TE+ G ++V
Sbjct: 814 LKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRRIRV 866
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 40.3 bits (90), Expect = 7e-04
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+++ L F KYG + V + PP FAF+EFE+ ++AEDA +G E G +
Sbjct: 272 VREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVEFEDPRDAEDAVKGRDGHEFDGYRI 330
Query: 278 KVEISR 295
+VE R
Sbjct: 331 RVEFPR 336
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
K+ +E F K+G + V + N P G+ ++E+E A A ++ TE+ G T+
Sbjct: 183 KESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTIS 242
Query: 281 VEIS 292
V +S
Sbjct: 243 VALS 246
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
L + F++YGK+ V + + G AFI F + Q A++A +A+N +M G T+K I
Sbjct: 26 LHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTI 85
Query: 290 SR 295
++
Sbjct: 86 AK 87
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
++ F + G + VA+NP GFAF+++ +EAE A NG ++ G+ ++V
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.3 bits (80), Expect = 0.012
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 100 GFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 35.5 bits (78), Expect = 0.021
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +2
Query: 149 GKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATL 277
GK+ S+ V +P G F F+ FE +EAE+A + +NG E+ G L
Sbjct: 133 GKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
I L F YG ++S V N GF F+ F + +EA A + MNG ++ L
Sbjct: 223 IDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPL 282
Query: 278 KVEISRK 298
V ++++
Sbjct: 283 YVALAQR 289
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 35.1 bits (77), Expect = 0.028
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L F +G + V + ++ GF F+EFE ++ A MN +E+ G T
Sbjct: 16 VDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRT 75
Query: 275 LKVEISR 295
++V +++
Sbjct: 76 IRVNLAK 82
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 35.1 bits (77), Expect = 0.028
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 268
++ LE+ YG++ + + L G+ F+EF++ ++A+D +NG +LG
Sbjct: 17 RERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDLNGRNLLG 65
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 35.1 bits (77), Expect = 0.028
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 268
++ +++ F YG+ + L G+ F+EF+ +AEDA NG +MLG
Sbjct: 15 REDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 34.7 bits (76), Expect = 0.037
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
++ F+ +GK+ ++ P G+ FIE+EN Q A DA ++MN ++ G L+V
Sbjct: 215 IKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272
Score = 34.3 bits (75), Expect = 0.049
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSV---WVALNPP--GFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+++ + F +G +N + W LN GFAF+E++ + A+ A MNG + G
Sbjct: 113 LREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRN 172
Query: 275 LKV 283
+KV
Sbjct: 173 IKV 175
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 34.7 bits (76), Expect = 0.037
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
G+AF+ ++N +A A MNG + TLKV +R
Sbjct: 69 GYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 34.3 bits (75), Expect = 0.049
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
P GFAF+ F + + EDA + ++G E G ++KV +R
Sbjct: 269 PRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQAR 306
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 274
I + ++ F+ +G ++SV + + G+ F++F + A+ A MNG E+ G
Sbjct: 253 ITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRP 312
Query: 275 LKV 283
LK+
Sbjct: 313 LKI 315
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGT 256
L++ F KYG L +++ + GFAF+ F ++AEDA M+ T
Sbjct: 32 LKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDAT 80
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.9 bits (69), Expect = 0.26
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 339
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 31.9 bits (69), Expect = 0.26
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 354
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F+ LN+ + + P GF F+++ ++A+ A +NG + LKV SR
Sbjct: 67 FEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
P G F+ ++ EA+ A S+++GT G+T+ ++I
Sbjct: 173 PKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQI 208
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
LE +GK+ V G+A++ F+ ++A+ A +A+N +E GA + +E +++
Sbjct: 19 LENLVKVFGKVREVDFK---EGYAYVVFKENKDADRAVAALNNSEFHGAKILMEKAKE 73
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
GF F+ EN ++ ED +G E G LKV + K
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASK 120
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
P G+ F E+++ + A A +NG E+ G L+V+
Sbjct: 65 PKGYGFCEYKDQETALSAMRNLNGYELNGRALRVD 99
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
N GFAFI F + ++ A AMNG + + V + K
Sbjct: 140 NSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 173 ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
A P G+AFIE+E+ ++ A +G ++ G + V++ R
Sbjct: 43 ASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVER 83
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 288 ISTFKVAPNI-SVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFP 148
+S+ K+ P + S+ F AL +S A+ + SN + P G+SAT P
Sbjct: 508 LSSPKIDPLLDSLGFGALGSSFANTEISNVVAKSPSGYSATSPSRRLP 555
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
+E DK + +W+ +P G + + +E+ A A NG + +G ++KVE++
Sbjct: 194 VEEMIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSIKVELA 253
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
I + LE F ++GK+ + N F F++FE + A++A + +G + G + V I
Sbjct: 58 IARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + ++ F YG++ +V + + GFA++E+ + +E E A M+G ++ G
Sbjct: 1168 VNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQE 1227
Query: 275 LKVE 286
+ V+
Sbjct: 1228 IAVQ 1231
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMN 250
GFAFIEFE+ Q+AE N
Sbjct: 130 GFAFIEFESKQQAEHVVQMFN 150
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 324 SEVGAAVTSGVVVHSEVREEAGLTTH 401
S+VG+ VT +VVH +EEA L+ H
Sbjct: 35 SDVGSQVTLLLVVHESKKEEAKLSLH 60
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGT-EMLG 268
P GFAF+EF N +EA A A N E+ G
Sbjct: 623 PLGFAFVEFTNHKEALAALRATNNNPELFG 652
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG 253
+ F++YG + VWV + G +++F A AC M+G
Sbjct: 39 IRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 263 TSQYHSSRYTHLPPPASS 210
T++YH ++T LPPP+ S
Sbjct: 169 TTEYHPEQHTPLPPPSKS 186
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
GF F+ F EA A +NGT + G KVE+S
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGR--KVEVS 157
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+++ F+++G +N + ++ + G+AF+EF + A+ A M+ M G LK
Sbjct: 114 IKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170
>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 728
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 321 GSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGR 425
G VGA++TS V +RE+ G TT+TV G+
Sbjct: 163 GVFVGASMTSVV---QRIREDLGATTYTVTCQYGK 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,363,954
Number of Sequences: 59808
Number of extensions: 151137
Number of successful extensions: 346
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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