Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M04
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 69 1e-12
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 69 1e-12
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 69 1e-12
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 50 6e-07
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 49 1e-06
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 49 1e-06
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 48 4e-06
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 48 4e-06
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 48 4e-06
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 40 7e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 39 0.002
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 39 0.002
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 39 0.002
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 39 0.002
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 39 0.002
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 37 0.006
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 37 0.008
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 36 0.011
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 36 0.011
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 36 0.011
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.025
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.025
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.025
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.025
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.025
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 35 0.025
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.043
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 34 0.043
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 34 0.043
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 34 0.043
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 34 0.057
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 32 0.17
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 32 0.17
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 32 0.17
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 32 0.17
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.17
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.30
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 31 0.30
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 31 0.30
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.30
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.53
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 0.70
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 0.70
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.93
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 30 0.93
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 1.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 1.2
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 1.6
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 1.6
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 1.6
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 1.6
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 28 2.8
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 27 5.0
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 27 5.0
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 27 5.0
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z46793-2|CAA86771.1| 322|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 69.3 bits (162), Expect = 1e-12
Identities = 26/56 (46%), Positives = 43/56 (76%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 19 LEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 69.3 bits (162), Expect = 1e-12
Identities = 26/56 (46%), Positives = 43/56 (76%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 19 LEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 69.3 bits (162), Expect = 1e-12
Identities = 26/56 (46%), Positives = 43/56 (76%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 19 LEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 50.4 bits (115), Expect = 6e-07
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 122 ALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
A+E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 43 AIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
+++ +E F KYG++ V + P FAF+EFE+ ++AEDA A +G E G ++VE
Sbjct: 20 VREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
Query: 287 ISR 295
+R
Sbjct: 80 FTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
+++ +E F KYG++ V + P FAF+EFE+ ++AEDA A +G E G ++VE
Sbjct: 20 VREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
Query: 287 ISR 295
+R
Sbjct: 80 FTR 82
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK--VE 286
++ +ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G++++ VE
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVE 70
Query: 287 ISR 295
++R
Sbjct: 71 MAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK--VE 286
++ +ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G++++ VE
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVE 70
Query: 287 ISR 295
++R
Sbjct: 71 MAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK--VE 286
++ +ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G++++ VE
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVE 70
Query: 287 ISR 295
++R
Sbjct: 71 MAR 73
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
+E F YGKL+ V + GF F++F++ ++A+DA +NG E+ G + +E R+
Sbjct: 18 VEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRR 72
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 40.3 bits (90), Expect = 7e-04
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
L F G++N+V + + P GFAFIEF A+ A MNG E G L+V +
Sbjct: 21 LGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNL 80
Query: 290 SRK 298
+ K
Sbjct: 81 ANK 83
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ + +E F YG++ V L GF F+EF++ ++AEDA +NG E+ G + ++
Sbjct: 14 VSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDY 70
Query: 290 SR 295
S+
Sbjct: 71 SK 72
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ + +E F YG++ V L GF F+EF++ ++AEDA +NG E+ G + ++
Sbjct: 14 VSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDY 70
Query: 290 SR 295
S+
Sbjct: 71 SK 72
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ + +E F YG++ V L GF F+EF++ ++AEDA +NG E+ G + ++
Sbjct: 14 VSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDY 70
Query: 290 SR 295
S+
Sbjct: 71 SK 72
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 229 LEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 169 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 228
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 166 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 225
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 229 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
F +YGK+ ++ + L+ G+A +E+E +EA +A N T++LG +KV+
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.1 bits (82), Expect = 0.006
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + + F K G + S+ + + P G+ FIEF ++Q AE A +NG E+ G
Sbjct: 29 VSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRI 88
Query: 275 LKVE 286
L+V+
Sbjct: 89 LRVD 92
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 36.7 bits (81), Expect = 0.008
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L F K G++ +++A + P GFAF+ FE+ +A A + +N M
Sbjct: 187 MNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMV 246
Query: 275 LKVEISR 295
LKVE +R
Sbjct: 247 LKVEWTR 253
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.011
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 274
I++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG + G
Sbjct: 113 IREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRN 172
Query: 275 LKV 283
LKV
Sbjct: 173 LKV 175
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 275 LK 280
L+
Sbjct: 278 LR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 36.3 bits (80), Expect = 0.011
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 274
I++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG + G
Sbjct: 113 IREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRN 172
Query: 275 LKV 283
LKV
Sbjct: 173 LKV 175
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 275 LKV 283
L+V
Sbjct: 278 LRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 36.3 bits (80), Expect = 0.011
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 274
I++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG + G
Sbjct: 113 IREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRN 172
Query: 275 LKV 283
LKV
Sbjct: 173 LKV 175
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 275 LKV 283
L+V
Sbjct: 278 LRV 280
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 35.1 bits (77), Expect = 0.025
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
GF F+EF+ ++A A MN +E+ G T++V +R
Sbjct: 53 GFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR 88
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.043
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
G+AF+ N EA +A ++NGT + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
G+ F+ + ++A A S+ NG + T+KV +R
Sbjct: 84 GYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYAR 119
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 34.3 bits (75), Expect = 0.043
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
L R F+ YGK+ + + A P G+AFIE+ + E A +G ++ G L V+
Sbjct: 120 LRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYE 179
Query: 293 R 295
R
Sbjct: 180 R 180
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 34.3 bits (75), Expect = 0.043
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATL 277
I + + F+ +G++ + + ++ GFA I F N +A+ +C +N E+ G +
Sbjct: 138 IDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCI 197
Query: 278 KVEISRK 298
++ I ++
Sbjct: 198 RLSIKQE 204
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 34.3 bits (75), Expect = 0.043
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATL 277
I + + F+ +G++ + + ++ GFA I F N +A+ +C +N E+ G +
Sbjct: 283 IDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCI 342
Query: 278 KVEISRK 298
++ I ++
Sbjct: 343 RLSIKQE 349
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ R FD++G +N V G+AF++FE + A A MN ++ G ++
Sbjct: 271 IRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQMNNADIGGQIVR 321
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 152 KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
K ++ LN P +AF+EF + +A A + NG E+L + V
Sbjct: 68 KAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNGRELLEKEMHV 110
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GFA++ FEN Q+ A S +NG + LKV
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
P GFAF+EF A+ A NG + G L+V +++
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
P GFAF+EF A+ A +NG G L+V + K
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+ Q L F K+G++ S V + P GF F+ F + A A +N + + G
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDC 308
Query: 278 KVEISR 295
K+ + R
Sbjct: 309 KLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+ Q L F K+G++ S V + P GF F+ F + A A +N + + G
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDC 308
Query: 278 KVEISR 295
K+ + R
Sbjct: 309 KLSVCR 314
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGA-TLKVEISRK 298
LE F+++ L + + N PG AF+EF+ A A + +N ++ T++V+ ++K
Sbjct: 148 LEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
L+ F+K+G ++ V + N GF F+ E Q+AE A ++G+ + G ++V
Sbjct: 169 LKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
L+ F+K+G ++ V + N GF F+ E Q+AE A ++G+ + G ++V
Sbjct: 169 LKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 32.3 bits (70), Expect = 0.17
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
G+ ++E++NL++AE + M+G ++ G + VE++
Sbjct: 176 GYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.30
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 31.5 bits (68), Expect = 0.30
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
++ L F+K G + V + N GF F+ +N +A+ A + NGT + G ++V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 284 EIS 292
++
Sbjct: 172 NLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 31.5 bits (68), Expect = 0.30
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
++ L F+K G + V + N GF F+ +N +A+ A + NGT + G ++V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 284 EIS 292
++
Sbjct: 172 NLA 174
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.30
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
F+K G + V + N GF F+ +N +A+ A + NGT + G ++V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.70
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 194 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 295
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.3 bits (65), Expect = 0.70
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 194 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 295
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.9 bits (64), Expect = 0.93
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATL 277
K+ L+ F KYG+++ V V ++ GFA +EF + A A SA++G G +
Sbjct: 291 KEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMM 350
Query: 278 KV 283
+
Sbjct: 351 HI 352
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
F +GK+ +V GF F++F A+++C ++NG L V ++
Sbjct: 104 FRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNGMSWKACCLDVHLA 154
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 170 VALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
V N GF F+EF ++A+ A +N ++ G +KV
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 86
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
GFAFI F + + ++ A AMNG + + V + K
Sbjct: 143 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 170 VALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
V N GF F+EF ++A+ A +N ++ G +KV
Sbjct: 59 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 96
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
GFAFI F + + ++ A AMNG + + V + K
Sbjct: 153 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 189
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
L F YG + V + +AF+ +E + A A MNG EM G ++ R
Sbjct: 253 LRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGR 308
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ + + + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 138 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 193
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ + + + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 148 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 203
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ + + + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 251 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 306
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ + + + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 219 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 274
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
LE F ++GK+N+ + + +AFIEF+N + E A M+ + + V+
Sbjct: 257 LEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDF 316
Query: 290 SR 295
S+
Sbjct: 317 SQ 318
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
LE F ++GK+N+ + + +AFIEF+N + E A M+ + + V+
Sbjct: 257 LEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDF 316
Query: 290 SR 295
S+
Sbjct: 317 SQ 318
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
LE F ++GK+N+ + + +AFIEF+N + E A M+ + + V+
Sbjct: 188 LEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDF 247
Query: 290 SR 295
S+
Sbjct: 248 SQ 249
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
P GF F + L A MN T+ GATLKVE
Sbjct: 277 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLKVE 311
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 297 SGTGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRT 428
S PA + V AV + + V A +TT TVAAAA T
Sbjct: 199 STAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
>Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical
protein F49E11.7 protein.
Length = 402
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
P GF F + L A MN T+ GATL+VE K
Sbjct: 296 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLRVETDGK 334
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 267 LQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 267 LQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 244 LQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
+P GFA++EF + ++A AM + + G +KV+ R
Sbjct: 117 HPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKR 154
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
PPG + + +D C+ + T+ +G L + I R
Sbjct: 387 PPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRR 424
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
PPG + + +D C+ + T+ +G L + I R
Sbjct: 389 PPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRR 426
>Z46793-2|CAA86771.1| 322|Caenorhabditis elegans Hypothetical
protein C56G7.3 protein.
Length = 322
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 249 FIALHASSASCKFSNSMKAKPGGFSATQTEFS 154
F ALHAS A C+F + K++ + TQT FS
Sbjct: 263 FSALHAS-AMCRFCSIYKSQKCTLANTQTIFS 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,924,307
Number of Sequences: 27780
Number of extensions: 108259
Number of successful extensions: 322
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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