Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M04
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 52 2e-07
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 50 6e-07
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 50 6e-07
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 50 6e-07
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 48 3e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 48 3e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 48 3e-06
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 48 4e-06
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 48 4e-06
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 48 4e-06
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 46 1e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 40 6e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 40 6e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 40 0.001
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 40 0.001
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 39 0.001
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 39 0.001
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 39 0.001
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 39 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 38 0.003
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.003
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 38 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 37 0.006
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.017
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.017
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 35 0.030
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.030
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.030
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 35 0.030
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 35 0.030
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 35 0.030
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.040
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 34 0.040
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 34 0.040
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 34 0.040
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 34 0.053
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 34 0.053
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.070
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 33 0.070
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.070
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.070
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.070
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.093
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.093
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.093
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.12
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 32 0.16
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 32 0.16
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 32 0.16
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 32 0.16
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 32 0.16
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 32 0.21
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 32 0.21
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.21
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.21
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 32 0.21
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 32 0.21
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.37
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 0.37
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 31 0.37
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.37
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 31 0.49
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.49
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 0.49
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 0.49
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 31 0.49
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 31 0.49
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 0.65
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 30 0.65
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 30 0.65
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 0.86
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 0.86
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 30 0.86
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 30 0.86
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 0.86
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 29 1.1
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 29 1.1
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 1.1
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 1.1
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 1.1
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 1.1
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 1.5
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 1.5
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 1.5
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 1.5
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 29 2.0
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 29 2.0
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 29 2.0
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 2.0
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 2.0
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 2.0
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 2.0
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 2.0
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 2.6
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 28 2.6
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 2.6
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 28 2.6
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 28 2.6
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 28 2.6
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 3.5
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 28 3.5
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 28 3.5
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 28 3.5
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 28 3.5
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 3.5
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 28 3.5
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 27 4.6
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 27 4.6
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 27 6.1
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 27 6.1
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei... 27 6.1
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 27 6.1
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 27 6.1
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 27 8.1
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 8.1
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 27 8.1
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 51.6 bits (118), Expect = 2e-07
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
+ + LE F +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 13 VTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 50.4 bits (115), Expect = 6e-07
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
+ + LE F +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 13 VTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 50.4 bits (115), Expect = 6e-07
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 250
+ + LE F +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 13 VTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 50.4 bits (115), Expect = 6e-07
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 250
+ + LE F +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 13 VTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG + + + + PPG+AF+EF++ ++AEDA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRV 77
Query: 284 EIS 292
E++
Sbjct: 78 ELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG + + + + PPG+AF+EF++ ++AEDA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRV 77
Query: 284 EIS 292
E++
Sbjct: 78 ELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG + + + + PPG+AF+EF++ ++AEDA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRV 77
Query: 284 EIS 292
E++
Sbjct: 78 ELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG + + + + PPG+AF+EFE+ ++A+DA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRV 77
Query: 284 EIS 292
E++
Sbjct: 78 ELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 47.6 bits (108), Expect = 4e-06
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG + + + + PPG+AF+EFE+ ++A+DA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRV 77
Query: 284 EIS 292
E++
Sbjct: 78 ELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG + + + + PPG+AF+EFE+ ++A+DA +G + G L+V
Sbjct: 18 IRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRV 77
Query: 284 EIS 292
EI+
Sbjct: 78 EIA 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I++ +E F KYG++ + + + PP + F+EFE+ ++AEDA +G + G L+V
Sbjct: 18 IREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRV 77
Query: 284 EIS 292
E++
Sbjct: 78 ELA 80
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 40.7 bits (91), Expect = 5e-04
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LE F YG++ + N F+EF +++ A+ A A+N TE+ G +K+E SR
Sbjct: 238 LENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSR 294
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 40.3 bits (90), Expect = 6e-04
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
LER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + VE + K
Sbjct: 113 LERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVK 167
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE--MLGATLKVE 286
++ LER F KYGK+ V + GFAF+ E+ ++AEDA A++ E G L+VE
Sbjct: 14 RESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 40.3 bits (90), Expect = 6e-04
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
LER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + VE + K
Sbjct: 113 LERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVK 167
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE--MLGATLKVE 286
++ LER F KYGK+ V + GFAF+ E+ ++AEDA A++ E G L+VE
Sbjct: 14 RESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVE 70
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LER F +YG++ V + + +AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 27 LERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
LER F +YG++ V + + +AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 27 LERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 290 SR 295
SR
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 290 SR 295
SR
Sbjct: 354 SR 355
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 268
IK+ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 487 IKEDVKEEC-SKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
K+ +E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 293 RK 298
K
Sbjct: 163 LK 164
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 235
+Q LER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 14 RQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + LE FD+YGK+ + + P GF FI F + + A+DA M+G E+
Sbjct: 23 VTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKV 82
Query: 275 LKV 283
+ V
Sbjct: 83 ISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + LE FD+YGK+ + + P GF FI F + + A+DA M+G E+
Sbjct: 23 VTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKV 82
Query: 275 LKV 283
+ V
Sbjct: 83 ISV 85
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
G+A IE+E +EA+ A SAMNG E+L + V+
Sbjct: 137 GYALIEYEKKEEAQSAISAMNGAELLTQNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLG 268
L+ F +YG + S V LNP G F F+ + N +EA A S MNG +M+G
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNG-KMIG 398
Score = 29.9 bits (64), Expect = 0.86
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATL 277
I + L + F K+G ++S V + G F F+ FE + A A MNG + L
Sbjct: 240 IGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL 299
Query: 278 KVEISRK 298
V ++K
Sbjct: 300 YVGRAQK 306
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEM 262
I AL F +G + S VA++ G+ F++FE + A+ A +NG M
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
G+A+I F N +A A A+N T + +++ +S +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM--LGATLKVE 286
++ LER F KYGK+ V + GFAF+ E+ ++AEDA A++ E G L+VE
Sbjct: 14 REGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVE 70
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
L F+KYG L V L+ GF FI F+ + ++A +AMNG ++ G T+ V+
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVD 81
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.5 bits (78), Expect = 0.017
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 122 ALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
+L + F + +L P GF FI FE+ +A+ A A+NG + G + VE +++
Sbjct: 86 SLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.5 bits (78), Expect = 0.017
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG-TEMLGA 271
+ + L + F+ +G + V + L+P GF FI+F L+ ++ A A+NG E+ G
Sbjct: 276 MSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGR 335
Query: 272 TLKV 283
T+KV
Sbjct: 336 TIKV 339
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 143 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 250
KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 467 KYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 34.7 bits (76), Expect = 0.030
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I L F YG++ V ++ +IEF ++++A+ A +NG E+ G LK+
Sbjct: 306 ISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.7 bits (76), Expect = 0.030
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
GF FI FE+ + + A + MNG E+ G L++ ++
Sbjct: 261 GFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.7 bits (76), Expect = 0.030
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +2
Query: 122 ALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
+L R F+K+G++ ++ +P G A+IEF + AE+A S ++GT + LK+
Sbjct: 531 SLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-LDGTSFMSRILKI 588
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 34.7 bits (76), Expect = 0.030
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
++ +ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 34.7 bits (76), Expect = 0.030
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
++ +ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
Score = 33.1 bits (72), Expect = 0.093
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 256
LER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 18 LERLFSKFGRVKRVDMK---SGYAFVYFEDERDAEDAIRRTDNT 58
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.7 bits (76), Expect = 0.030
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+ + L F ++GK+ S+ +A + G+AF+ F+N ++A A +NGT+ L
Sbjct: 212 VSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
Query: 278 KVEISRK 298
V ++K
Sbjct: 272 YVGRAQK 278
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 34.3 bits (75), Expect = 0.040
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
L + F ++G++ SV + + G F++F + + AEDA ++NGT + T+++ R
Sbjct: 337 LRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.3 bits (75), Expect = 0.040
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+Q L R F+++G + +++ + P GF FI+F + +A +A M+G +LG L
Sbjct: 49 RQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGREL 108
Query: 278 KV 283
V
Sbjct: 109 TV 110
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 34.3 bits (75), Expect = 0.040
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
I L F +G++ + + F+EF +++ AE A A+N E+ G +KVE
Sbjct: 264 ISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEP 323
Query: 290 SR 295
SR
Sbjct: 324 SR 325
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/61 (18%), Positives = 27/61 (44%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
++ L F++YG + +++ GF I + +++ A A ++ + L +
Sbjct: 179 VEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHF 238
Query: 290 S 292
S
Sbjct: 239 S 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 34.3 bits (75), Expect = 0.040
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
I L F +G++ + + F+EF +++ AE A A+N E+ G +KVE
Sbjct: 264 ISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEP 323
Query: 290 SR 295
SR
Sbjct: 324 SR 325
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/61 (18%), Positives = 27/61 (44%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
++ L F++YG + +++ GF I + +++ A A ++ + L +
Sbjct: 179 VEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHF 238
Query: 290 S 292
S
Sbjct: 239 S 239
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 33.9 bits (74), Expect = 0.053
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 116 QXALERXFDKYGKL---NSVW--VALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ L F+++G L N V VA P GFAF+ +E +EA A M+G + G +
Sbjct: 90 EDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIF 149
Query: 281 VE 286
VE
Sbjct: 150 VE 151
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.9 bits (74), Expect = 0.053
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+Q L + F+++G + +++ + P GF F++F + +A DA M+G +LG L
Sbjct: 48 RQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGREL 107
Query: 278 KV 283
V
Sbjct: 108 TV 109
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.070
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L F + G+L SV V N P G+ FIEF + AE NGT+M G
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTE 94
Query: 275 LKVEIS 292
L ++
Sbjct: 95 LTFRLN 100
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.070
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
L F+++G + V++ + P GFAF+EF + +A +A +MN G + V +
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVV 122
Query: 290 S 292
+
Sbjct: 123 A 123
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.070
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.5 bits (73), Expect = 0.070
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F FI +++ A++A + MNG ++ G LKV++ R
Sbjct: 382 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.5 bits (73), Expect = 0.070
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F FI +++ A++A + MNG ++ G LKV++ R
Sbjct: 373 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.1 bits (72), Expect = 0.093
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNG 253
L+ F +YGK+ S V + GF F+ FEN +A A ++NG
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 91
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 33.1 bits (72), Expect = 0.093
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 194 AFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
A+IE+ N +EA A A+N TE+ G L VEI++
Sbjct: 389 AYIEYSNSEEAT-AALALNNTEVFGRALNVEIAK 421
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.1 bits (72), Expect = 0.093
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
GFAF+ N+++ ++GTE LG LKV + K
Sbjct: 127 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK 163
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.7 bits (71), Expect = 0.12
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+E F ++G + V VA N F FI+FE+ + AE A AMN ++ LKV +
Sbjct: 76 IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHV 135
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
N G+AF +++L + AC+A+NG +M TL V
Sbjct: 398 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
N G+AF +++L + AC+A+NG +M TL V
Sbjct: 398 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 32.3 bits (70), Expect = 0.16
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
N G+AF +++L + AC+A+NG +M TL V
Sbjct: 398 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ L + F YG + + F+EF ++++A A MNG E+ G + +E
Sbjct: 224 VSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEF 283
Query: 290 SR 295
SR
Sbjct: 284 SR 285
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLG 268
+ L+ F +YG + S V +N G F F+ + N +EA A MNG +M+G
Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMIG 394
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNG 253
I AL F +G + S VA++ G+ F++FE + A+ A +NG
Sbjct: 143 IDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEM 262
I L++ F KYG ++S V + G F F+ F + + A A MNG +
Sbjct: 236 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 290
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 137 FDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F G +N V + ++ P GFA++EF ++ ++A +N +E+ G LKV R
Sbjct: 109 FQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 137 FDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F G +N V + ++ P GFA++EF ++ ++A +N +E+ G LKV R
Sbjct: 109 FQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVSPKR 164
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ ALE F++ GK+ V + GF F+ + QE + A +++NG ++ G
Sbjct: 260 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 319
Query: 275 LKV 283
++V
Sbjct: 320 IRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ ALE F++ GK+ V + GF F+ + QE + A +++NG ++ G
Sbjct: 268 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 327
Query: 275 LKV 283
++V
Sbjct: 328 IRV 330
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
++R F+ YG + V + + P G+AFIE+ + ++ + A +G ++ G + V++
Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
Query: 290 SR 295
R
Sbjct: 214 ER 215
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNG 253
L+ F +YG ++S V + G F F+ FEN ++A A A+NG
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
GF F+ + + EAE A S M+G E+ G + V++
Sbjct: 45 GFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + +L+ F +G++ V +A + GF F++F +A A AM+G +LG
Sbjct: 52 VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRP 111
Query: 275 LKVEIS 292
L++ +
Sbjct: 112 LRISFA 117
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 31.1 bits (67), Expect = 0.37
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
I + A+ R F YG + +V + ++ + F+ F N + A+DA M+G + G +
Sbjct: 18 ITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
Query: 278 KV 283
+V
Sbjct: 78 RV 79
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2
Query: 116 QXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ L F K G++ + ++ GF F+ F + EA+ A NG ++ G T+
Sbjct: 47 EQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIF 106
Query: 281 VEISR 295
V+ ++
Sbjct: 107 VDYAK 111
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.7 bits (66), Expect = 0.49
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F F+ +++ A++A MNG + G LKV++ R
Sbjct: 392 FGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGT-EMLGAT 274
+ + ++ F KYG + + + G AF+++E ++A A ++NG +M G+T
Sbjct: 117 VSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGST 176
Query: 275 LKVEI 289
+ + +
Sbjct: 177 VPLVV 181
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +2
Query: 116 QXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ L + F +YG++ V V ++ P GFA++ F + +EAE A +N + G +
Sbjct: 34 EETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVI 93
Query: 281 VEISR 295
++ ++
Sbjct: 94 LDTTK 98
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 300 GTGPAEVGSEVGAAVTSGVVV--HSEVREEAGLTTHTVAAAAGRTIVT 437
GT PA + + + A + V H++ E+G HT+ A GRTI T
Sbjct: 494 GTTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 30.7 bits (66), Expect = 0.49
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + LE F K GK+ V + L+P GF FI +++ +A +++ + + G
Sbjct: 86 VTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 145
Query: 275 LKVEISRK 298
+ VE +R+
Sbjct: 146 ITVEKARR 153
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 30.3 bits (65), Expect = 0.65
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
I L R YG++ + ++ +IEF +++ A A +NG E+ G L++
Sbjct: 313 ISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQL 370
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 30.3 bits (65), Expect = 0.65
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 292
+++ F G +N V + + P GFA++EF ++ +++ +N +E+ G +KV
Sbjct: 119 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILNESELHGRQIKVSAK 177
Query: 293 R 295
R
Sbjct: 178 R 178
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 30.3 bits (65), Expect = 0.65
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 290 SR 295
SR
Sbjct: 254 SR 255
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 29.9 bits (64), Expect = 0.86
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
F+KYG + + ++++ G FIE + +EA A ++ E G LKV+ ++
Sbjct: 114 FEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAK 170
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 0.86
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 146 YGKLNSVWVALNPPGFAFIEFENLQE 223
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + LE F + GK+ S V+ P GF F+ F + ++ E A A+N + + G
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Query: 275 LKV 283
++V
Sbjct: 248 IRV 250
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 29.9 bits (64), Expect = 0.86
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
GFAF+ +E+ + A +NG +LG T+KV+
Sbjct: 78 GFAFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACSAMNGTEMLG 268
LE F ++G + S V ++ G + F+EF +EA A MNG +M+G
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNG-KMVG 289
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNG 253
L+R F ++G++ S V + G F F+ FE + A A MNG
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 181
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
P GFA++EF ++ ++A +N +E+ G LKV
Sbjct: 131 PKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKV 163
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNG 253
GF F+ F N Q+A+ A + MNG
Sbjct: 186 GFGFVSFRNQQDAQTAINEMNG 207
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 113 KQXALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATL 277
++ L F +G + V+VA++ GF F+ F + ++A+ A + +NG L
Sbjct: 225 REPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLIL 284
Query: 278 KVE 286
+VE
Sbjct: 285 RVE 287
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
N G+AF +++ + AC+A+NG +M TL V
Sbjct: 414 NSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTV 448
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNG 253
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNG 253
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
L + F +G++ S+ + G+AF+EF QEA +A A+ T G L +E
Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLE 742
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 191 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 295
P GF FI F++ +A A +++G + G + VE+++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L+ F +G++ V +A++ P G ++EF+ +AE A M+G ++ G
Sbjct: 109 VNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKV 168
Query: 275 LK 280
+K
Sbjct: 169 VK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + L+ F +G++ V +A++ P G ++EF+ +AE A M+G ++ G
Sbjct: 109 VNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKV 168
Query: 275 LK 280
+K
Sbjct: 169 VK 170
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +2
Query: 116 QXALERXFDKYG--KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 262
+ +++ +++ G K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 75 EGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ F++ + DA MNG E+ G + V
Sbjct: 48 GFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ F++ + DA MNG E+ G + V
Sbjct: 48 GFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ F++ + DA MNG E+ G + V
Sbjct: 48 GFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ F++ + +DA MNG ++ G ++ V
Sbjct: 50 GFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ F++ + +DA MNG ++ G ++ V
Sbjct: 50 GFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
I + L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 257 IDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNF 316
Query: 290 SR 295
S+
Sbjct: 317 SK 318
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGAT 274
+ + LE F K GK+ V + L+P GF FI +++ +A +++ + + G
Sbjct: 56 VTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
Query: 275 LKVE 286
+ VE
Sbjct: 116 ITVE 119
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 290 S 292
S
Sbjct: 192 S 192
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGT-EMLGAT 274
+ + ++ F KYG + + + G AF+++E ++A A ++NG +M G+T
Sbjct: 117 VSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGST 176
Query: 275 LKVEI 289
+ + +
Sbjct: 177 VPLVV 181
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNG 253
F +YG + +++AL+ G+AF++F + A A A+NG
Sbjct: 227 FSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNG 269
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ ++ E E A NG E+ G L+V
Sbjct: 133 GFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNG 253
GF F+ FEN +A A A+NG
Sbjct: 265 GFGFVNFENSDDAARAVDALNG 286
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 194 AFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
AF++F+N A A +NG LG L+V+ + K
Sbjct: 68 AFVDFKNEAFASQAHRQLNGLRFLGKVLQVQRANK 102
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
L F + G++ + + L+ P GF F+ F + ++ EDA ++GT + ++V+
Sbjct: 50 LYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVD 108
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 244
F K+GK+ + + +N AF++F +EAE A A
Sbjct: 459 FQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 244
F K+GK+ + + +N AF++F +EAE A A
Sbjct: 459 FQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 122 ALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
+L++ F +G++ V + GF F+ F A +A M+G E+ G ++V
Sbjct: 50 SLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109
Query: 287 IS 292
++
Sbjct: 110 LA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 122 ALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 286
+L++ F +G++ V + GF F+ F A +A M+G E+ G ++V
Sbjct: 50 SLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109
Query: 287 IS 292
++
Sbjct: 110 LA 111
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 116 QXALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLK 280
+ L F+ +G+L V + ++ G+AF+E+ + A A MNG + G +
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIV 354
Query: 281 VEISR 295
V++++
Sbjct: 355 VDVAK 359
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 110 IKQXALERXFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATL 277
+ + L F YG++ S V + GF F+ F N +E++ A +NG + G +
Sbjct: 315 MNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Query: 278 KVEISRK 298
V ++ +
Sbjct: 375 VVRVAER 381
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
L+ F++Y + + PG AF+E+E+ ++ A A+ G
Sbjct: 170 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 125 LERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 253
L+ F++Y + + PG AF+E+E+ ++ A A+ G
Sbjct: 171 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 246 IALHASSASCKFSNSMKAKPGGFSATQTEF 157
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 246 IALHASSASCKFSNSMKAKPGGFSATQTEF 157
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 978
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 303 TGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRTIVTETDMA 452
+G EVG EV AAV + + ++V A TH + +A + + ET A
Sbjct: 630 SGALEVGKEVEAAVDADLRQRAKVHHTA---THLLQSALKKVVGQETSQA 676
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 KYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 253
K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 PPGFAFIEFENLQEAEDACSAMNG-TEMLGATLKVEIS 292
P GFAF E+E + A+ A +G + TLK IS
Sbjct: 47 PKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAIS 84
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 283
GF F+ ++EAE A N E+ G L V
Sbjct: 155 GFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTV 186
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 137 FDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
F K G++ V + +N G F+EF ++ EAE+A NG + + ++++ K
Sbjct: 147 FKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANK 204
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 188 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 289
G F+EF ++ EA+ A MNG + + +++
Sbjct: 530 GCGFVEFASVNEAQKALQKMNGENLRSREIFLDV 563
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 179 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 298
NP F FI FE + + A T + A K+ + K
Sbjct: 321 NPVCFGFISFETVASVQSVLQAAKNTPFMLADRKLRVKEK 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,607,797
Number of Sequences: 28952
Number of extensions: 105091
Number of successful extensions: 430
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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