Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M03
(434 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 154 7e-37
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 151 6e-36
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 137 1e-31
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 131 7e-30
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 131 7e-30
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 129 3e-29
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 128 5e-29
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 123 1e-27
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 123 2e-27
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 114 7e-25
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 113 1e-24
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 113 1e-24
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 113 1e-24
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 111 6e-24
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 111 6e-24
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 105 5e-22
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 105 5e-22
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 104 7e-22
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 101 7e-21
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 100 1e-20
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 100 1e-20
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 100 2e-20
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 99 2e-20
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 94 1e-18
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 93 2e-18
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 92 5e-18
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 90 2e-17
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 85 6e-16
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 85 6e-16
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 85 6e-16
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 85 6e-16
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 84 1e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 79 5e-14
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 76 3e-13
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 76 4e-13
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 71 8e-12
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 71 1e-11
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 71 1e-11
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 70 2e-11
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 69 4e-11
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 66 3e-10
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 61 9e-09
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 58 8e-08
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 58 1e-07
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 57 1e-07
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 57 1e-07
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 56 4e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 55 6e-07
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 55 7e-07
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 55 7e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 53 2e-06
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 50 2e-05
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 49 4e-05
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 49 4e-05
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 49 5e-05
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 48 7e-05
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 48 9e-05
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 48 1e-04
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 47 2e-04
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 47 2e-04
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 47 2e-04
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 46 3e-04
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 45 8e-04
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 45 8e-04
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 44 0.001
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 44 0.002
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 44 0.002
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 43 0.002
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 42 0.004
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 42 0.004
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 42 0.006
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 42 0.006
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 42 0.007
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 40 0.017
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 40 0.017
UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2; Ya... 40 0.030
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 39 0.040
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 39 0.040
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 39 0.040
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 39 0.053
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 39 0.053
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 38 0.070
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 38 0.092
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 38 0.092
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 38 0.092
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 37 0.16
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 36 0.28
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 36 0.37
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 36 0.37
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 36 0.49
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 35 0.65
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 34 1.1
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 33 2.6
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 33 2.6
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 33 3.5
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 33 3.5
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 32 4.6
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 4.6
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 32 4.6
UniRef50_Q0BZ17 Cluster: Amidohydrolase family/endoribonuclease ... 32 6.0
UniRef50_Q4D974 Cluster: Putative uncharacterized protein; n=2; ... 31 8.0
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 31 8.0
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 154 bits (374), Expect = 7e-37
Identities = 82/144 (56%), Positives = 87/144 (60%)
Frame = +2
Query: 2 RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAX 181
RK +YSTNHKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 1 RKWLYSTNHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAF 60
Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG 361
N LVPL+LGAPD+AFPR+NN+ F IVENGAG
Sbjct: 61 IMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAG 120
Query: 362 TG*TVYPPLSSNIAHXGRSVDLAI 433
TG TVYPPLSSNIAH G SVDLAI
Sbjct: 121 TGWTVYPPLSSNIAHGGSSVDLAI 144
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 151 bits (366), Expect = 6e-36
Identities = 79/131 (60%), Positives = 90/131 (68%)
Frame = -3
Query: 432 IARSTDLPXCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAP 253
I STD P CAI SGG TVHPVP P STI L + ++EGG +QNL+LFIRGNA+SGAP
Sbjct: 88 IPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLFIRGNAMSGAP 147
Query: 252 SIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSARIKSLKDVPII 73
++ GTNQFPNPP KA AVT+ L I S PI PG PNSARIKSL DVP +
Sbjct: 148 NMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCPNSARIKSLSDVPTM 206
Query: 72 PDQIPKIKYNV 40
P PK+KYNV
Sbjct: 207 PAHAPKMKYNV 217
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 137 bits (331), Expect = 1e-31
Identities = 71/141 (50%), Positives = 82/141 (58%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
++STNHKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 8 LFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMI 67
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N LVPL++GAPD+AFPR+NN+ F VE GAGTG
Sbjct: 68 FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGW 127
Query: 371 TVYPPLSSNIAHXGRSVDLAI 433
TVYPPL+ N+AH G SVDLAI
Sbjct: 128 TVYPPLAGNLAHAGASVDLAI 148
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 131 bits (316), Expect = 7e-30
Identities = 68/140 (48%), Positives = 78/140 (55%)
Frame = +2
Query: 14 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
+STNHKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 8 FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N LVPL++GAPD+AFPR+NN+ F VE GAGTG T
Sbjct: 68 FMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127
Query: 374 VYPPLSSNIAHXGRSVDLAI 433
VYPPL+ N+AH G SVDL I
Sbjct: 128 VYPPLAGNLAHAGASVDLTI 147
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 131 bits (316), Expect = 7e-30
Identities = 68/140 (48%), Positives = 78/140 (55%)
Frame = +2
Query: 14 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
+STNHKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 8 FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N LVPL++GAPD+AFPR+NN+ F VE GAGTG T
Sbjct: 68 FMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127
Query: 374 VYPPLSSNIAHXGRSVDLAI 433
VYPPL+ N+AH G SVDL I
Sbjct: 128 VYPPLAGNLAHAGASVDLTI 147
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 129 bits (311), Expect = 3e-29
Identities = 66/141 (46%), Positives = 79/141 (56%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
++STNHKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 7 LFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMI 66
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG
Sbjct: 67 FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGW 126
Query: 371 TVYPPLSSNIAHXGRSVDLAI 433
TVYPPL+ N +H G SVDL I
Sbjct: 127 TVYPPLAGNYSHPGASVDLTI 147
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 128 bits (309), Expect = 5e-29
Identities = 66/108 (61%), Positives = 71/108 (65%)
Frame = +2
Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVDLAI 433
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 123 bits (297), Expect = 1e-27
Identities = 63/140 (45%), Positives = 76/140 (54%)
Frame = +2
Query: 14 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
+S NHKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 9 FSCNHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIF 68
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N VPL++GAPD+AFPR+NNI F +VE GAGTG T
Sbjct: 69 FLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWT 128
Query: 374 VYPPLSSNIAHXGRSVDLAI 433
VYPPL+S AH G SVD+AI
Sbjct: 129 VYPPLASIQAHSGGSVDMAI 148
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 123 bits (296), Expect = 2e-27
Identities = 63/136 (46%), Positives = 74/136 (54%)
Frame = +2
Query: 26 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 205
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 206 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 385
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 386 LSSNIAHXGRSVDLAI 433
L+ N+AH G SVDL I
Sbjct: 121 LAGNLAHAGASVDLTI 136
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 114 bits (275), Expect = 7e-25
Identities = 58/108 (53%), Positives = 66/108 (61%)
Frame = +2
Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVDLAI 433
+ F VE+GAGTG TVYPPLS N AH G SVDLAI
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAI 130
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 113 bits (273), Expect = 1e-24
Identities = 64/143 (44%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVP+++GAPD+AFPR+NNI F VE GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLS +H G SVDLAI
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAI 147
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 113 bits (273), Expect = 1e-24
Identities = 64/143 (44%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVP+++GAPD+AFPR+NNI F VE GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLS +H G SVDLAI
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAI 147
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 113 bits (273), Expect = 1e-24
Identities = 64/143 (44%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVP+++GAPD+AFPR+NNI F VE GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLS +H G SVDLAI
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAI 147
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 111 bits (267), Expect = 6e-24
Identities = 61/143 (42%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
I+STNHKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 13 IFSTNHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFL 72
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVP+++G+PD+AFPR+NNI F +VE G GT
Sbjct: 73 MIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGT 132
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLSS +H G +VDLAI
Sbjct: 133 GWTVYPPLSSIQSHSGGAVDLAI 155
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 111 bits (267), Expect = 6e-24
Identities = 59/143 (41%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 184
++STNHKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 8 LFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFL 67
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N VP+++GAPD+AFPR+NNI F +VE G+GT
Sbjct: 68 MIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGT 127
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLS +H G +VDLAI
Sbjct: 128 GWTVYPPLSGITSHSGGAVDLAI 150
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 105 bits (251), Expect = 5e-22
Identities = 61/143 (42%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N L+PL++GA D AFPRINNI F +VE+GAGT
Sbjct: 66 MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLSS AH G SVDLAI
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAI 148
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 105 bits (251), Expect = 5e-22
Identities = 61/143 (42%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N L+PL++GA D AFPRINNI F +VE+GAGT
Sbjct: 66 MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLSS AH G SVDLAI
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAI 148
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 104 bits (250), Expect = 7e-22
Identities = 59/127 (46%), Positives = 68/127 (53%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
+ STNHKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 8 LXSTNHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMI 67
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N LVPL++GAPD+AFPR+NN+ F VE GAGTG
Sbjct: 68 FXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGW 127
Query: 371 TVYPPLS 391
TVYPPL+
Sbjct: 128 TVYPPLA 134
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 101 bits (242), Expect = 7e-21
Identities = 58/143 (40%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDI LY EL PG L G++Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAIL 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N ++PL++GA D AFPRINNI F +VE+GAGT
Sbjct: 66 MIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGT 125
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPL+S AH G SVDLAI
Sbjct: 126 GWTVYPPLASIQAHSGPSVDLAI 148
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 100 bits (240), Expect = 1e-20
Identities = 51/108 (47%), Positives = 63/108 (58%)
Frame = +2
Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVDLAI 433
+ F + G GTG TVYPPLS + H G SVDL I
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGI 131
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 100 bits (240), Expect = 1e-20
Identities = 57/143 (39%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVL 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N ++PL++GA D++FPRIN+I F +VE+GAGT
Sbjct: 66 MIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGT 125
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLSS AH G SVDLAI
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAI 148
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 100 bits (239), Expect = 2e-20
Identities = 56/140 (40%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 193
S+N KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 9 SSNAKDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIF 68
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+PL LG PD+ FPR+NNI + +ENG GTG T
Sbjct: 69 FMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWT 128
Query: 374 VYPPLSSNIAHXGRSVDLAI 433
+YPPLS +H G SVDLAI
Sbjct: 129 LYPPLSGIQSHSGPSVDLAI 148
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 99 bits (238), Expect = 2e-20
Identities = 58/144 (40%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 193
STN KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 37 STNAKDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIF 96
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+PL++G PD+AFPR+NNI F I+E G GTG T
Sbjct: 97 FMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWT 156
Query: 374 V----YPPLSSNIAHXGRSVDLAI 433
+ YPPLS +H G SVDLAI
Sbjct: 157 LLKDKYPPLSGLQSHSGPSVDLAI 180
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 93.9 bits (223), Expect = 1e-18
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 193
S+N KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 35 SSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIF 94
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T
Sbjct: 95 FMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWT 154
Query: 374 VYPPLSSNIAHXGRSVDLAI 433
+YPPLS +H VDL I
Sbjct: 155 LYPPLSGIQSHSSMGVDLGI 174
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 93.1 bits (221), Expect = 2e-18
Identities = 55/143 (38%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
++STN KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 11 LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N L+PL+LGA D+AF R+NNI F +VE GAGT
Sbjct: 71 MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVY PL+ +H G +VDLAI
Sbjct: 131 GWTVYFPLAGIQSHSGPAVDLAI 153
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 91.9 bits (218), Expect = 5e-18
Identities = 53/143 (37%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
I++TNHK IG LY EL PG L G+ YN I T H
Sbjct: 9 IFTTNHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVL 68
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N VP+++GAPD++FPR+NN F E G GT
Sbjct: 69 MLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGT 128
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G TVYPPLSS +H G SVDL I
Sbjct: 129 GWTVYPPLSSLQSHSGASVDLMI 151
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 90.2 bits (214), Expect = 2e-17
Identities = 54/132 (40%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 5 LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVP+++GAPD+AFPR+NNI F VE GAGT
Sbjct: 65 MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124
Query: 365 G*TVYPPLSSNI 400
G TV LS I
Sbjct: 125 GWTVKCKLSQII 136
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 85.0 bits (201), Expect = 6e-16
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL +G+ D AFPRINN+ F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G T+YPPL+S +H G S+D+AI
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAI 165
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 85.0 bits (201), Expect = 6e-16
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL +G+ D AFPRINN+ F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G T+YPPL+S +H G S+D+AI
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAI 165
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 85.0 bits (201), Expect = 6e-16
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL +G+ D AFPRINN+ F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G T+YPPL+S +H G S+D+AI
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAI 165
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 85.0 bits (201), Expect = 6e-16
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
++STN ++I LY EL NP L+ + Q++N ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL +G+ D AFPRINN+ F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHXGRSVDLAI 433
G T+YPPL+S +H G S+D+AI
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAI 165
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 84.2 bits (199), Expect = 1e-15
Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 184
++STNHKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 9 LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFL 68
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N VP+++G+PD+AFPR+NNI F +VE G G+
Sbjct: 69 MIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGS 128
Query: 365 G*TV 376
G TV
Sbjct: 129 GWTV 132
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 78.6 bits (185), Expect = 5e-14
Identities = 38/63 (60%), Positives = 43/63 (68%)
Frame = +2
Query: 245 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVD 424
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 425 LAI 433
LAI
Sbjct: 61 LAI 63
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 76.2 bits (179), Expect = 3e-13
Identities = 57/159 (35%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY- 154
STNHKDIGTLY AEL PG + D DQ Y
Sbjct: 33 STNHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYH 92
Query: 155 --NTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 328
N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 329 XXXXIVE----NGAGTG*TVYPPLSSNIAHXGRSVDLAI 433
V NGAGTG TVY PLS++ G +VD+AI
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAI 190
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 75.8 bits (178), Expect = 4e-13
Identities = 47/132 (35%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
++STN KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 11 LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N L+PL+LGA D+AF R+NNI F +VE GAGT
Sbjct: 71 MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130
Query: 365 G*TVYPPLSSNI 400
G TV SS +
Sbjct: 131 GWTVKKICSSKM 142
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 71.3 bits (167), Expect = 8e-12
Identities = 33/63 (52%), Positives = 40/63 (63%)
Frame = +2
Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 290 IRF 298
+ F
Sbjct: 84 MSF 86
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 70.9 bits (166), Expect = 1e-11
Identities = 39/139 (28%), Positives = 59/139 (42%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
S NHKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 11 SVNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFF 70
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +PL++ D++ PR+NN+ + G G G T+
Sbjct: 71 FVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTM 130
Query: 377 YPPLSSNIAHXGRSVDLAI 433
YPPLS++ G +DLA+
Sbjct: 131 YPPLSNSEFMDGLPIDLAV 149
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 70.5 bits (165), Expect = 1e-11
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
I + NHK IGT Y EL +PG G Q+YN+++T H
Sbjct: 16 INTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVL 75
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N ++PL+LGAP++AFPR+N + F + G G+
Sbjct: 76 MIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGS 135
Query: 365 G*TVYPPLS 391
T YPPLS
Sbjct: 136 SWTFYPPLS 144
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 69.7 bits (163), Expect = 2e-11
Identities = 42/124 (33%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
+YSTN KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVL 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
N L+PL++GA D++F R+NNI F +VE+GAGT
Sbjct: 66 MIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGT 125
Query: 365 G*TV 376
G TV
Sbjct: 126 GWTV 129
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 68.9 bits (161), Expect = 4e-11
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +2
Query: 107 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 280
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 281 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVDLAI 433
+NN+ + +++ GAG G T YPP+S+ R+VD AI
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAI 253
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 66.1 bits (154), Expect = 3e-10
Identities = 37/63 (58%), Positives = 39/63 (61%)
Frame = +2
Query: 245 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVD 424
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 425 LAI 433
LAI
Sbjct: 64 LAI 66
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 61.3 bits (142), Expect = 9e-09
Identities = 38/141 (26%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXXXX 190
S +HK IG Y EL G L GD Q YN ++T+H
Sbjct: 10 SVSHKMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMV 69
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N +P++ G PD+ FPR+NN+ F + E G G G
Sbjct: 70 FAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGW 129
Query: 371 TVYPPLSSNIAHXGRSVDLAI 433
T+YP L H + D +
Sbjct: 130 TLYPTLICIDFHSSLACDFVM 150
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 58.0 bits (134), Expect = 8e-08
Identities = 41/141 (29%), Positives = 55/141 (39%), Gaps = 1/141 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
I +T+HKDIG LY +L P S Y VT H
Sbjct: 16 ITTTDHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIML 75
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG 367
N +VPL +GA D+AFPR+N + + E+GA G
Sbjct: 76 LWFASPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVG 134
Query: 368 *TVYPPLSSNIAHXGRSVDLA 430
T+Y PL++ I G +DLA
Sbjct: 135 WTLYAPLTARIYTPGIGLDLA 155
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 57.6 bits (133), Expect = 1e-07
Identities = 30/94 (31%), Positives = 43/94 (45%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ +HKDIG LY EL +PG + + YN+++T+H
Sbjct: 91 TVDHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFL 150
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 298
N L+PL++GA D+AFPRIN I F
Sbjct: 151 FATPIIAAFS-NYLIPLLIGADDMAFPRINAIAF 183
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 57.2 bits (132), Expect = 1e-07
Identities = 34/128 (26%), Positives = 51/128 (39%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
+ + +HK IG ++ EL PG I D YN + T H
Sbjct: 30 LLTQDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMI 89
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N L+P+++GA D+AFP++N + F +V+ GA TG
Sbjct: 90 FLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF-YVYLAGAVVALFGMVQGGADTGW 148
Query: 371 TVYPPLSS 394
T Y P S+
Sbjct: 149 TFYTPYST 156
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 57.2 bits (132), Expect = 1e-07
Identities = 54/137 (39%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Frame = +2
Query: 26 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 202
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 203 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 382
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 383 PLSSNIAHXGRSVDLAI 433
P SS +AH +VDL I
Sbjct: 121 PXSSGLAHSSGAVDLGI 137
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 55.6 bits (128), Expect = 4e-07
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQI--YNTIVTAHAX 181
I + NHK +G Y EL + +I + + YN I T H
Sbjct: 9 ITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGI 68
Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG 361
N +P++ G+P++A+PRIN+I E G G
Sbjct: 69 IMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGG 128
Query: 362 TG*TVYPPLSSNI 400
TG T+YPPLS+++
Sbjct: 129 TGWTLYPPLSTSL 141
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 55.2 bits (127), Expect = 6e-07
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 1/140 (0%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+T+HK +G +Y AEL PG ++ +N + T H
Sbjct: 35 TTDHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLL 94
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*T 373
N ++PL +GAPD+AFPR+N F + GA G T
Sbjct: 95 YGTPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWT 153
Query: 374 VYPPLSSNIAHXGRSVDLAI 433
+Y PLS I G D+ I
Sbjct: 154 MYSPLSDAIHSPGLGSDMWI 173
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 54.8 bits (126), Expect = 7e-07
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXX 187
I++T+HK +G LY EL G I DD +YNT + H
Sbjct: 9 IFTTDHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAM 68
Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
N +PL++GA D+AFPR+N + + +
Sbjct: 69 ILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIM 128
Query: 368 *TVYPPLS 391
T YPP S
Sbjct: 129 WTGYPPYS 136
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 54.8 bits (126), Expect = 7e-07
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDD--QIYNTIVTAHAXXX 187
S NHK IG Y EL G +I D +IYN + T H
Sbjct: 14 SGNHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIM 73
Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
N L P++LG D+ +PR+N +E G+GTG
Sbjct: 74 VFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTG 133
Query: 368 *TVYPPLSSNIAHXG 412
T+YPPLS+++++ G
Sbjct: 134 WTLYPPLSTSLSNVG 148
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 53.2 bits (122), Expect = 2e-06
Identities = 34/129 (26%), Positives = 48/129 (37%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
I + +HK +G +Y A+L P + D YN I T H
Sbjct: 48 ITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMI 107
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N +VPL +GA D+AFP +NN+ F ++ G
Sbjct: 108 IFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGW 166
Query: 371 TVYPPLSSN 397
T Y PL+SN
Sbjct: 167 TSYMPLASN 175
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 50.0 bits (114), Expect = 2e-05
Identities = 33/129 (25%), Positives = 48/129 (37%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
+ + +HK IG ++ EL PG I D YN T H
Sbjct: 37 LLTVDHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMI 96
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N ++PL+LGA D+AFPR+N + ++ G TG
Sbjct: 97 FLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSL-YIYLAGAVLALWGMLNGGLDTGW 155
Query: 371 TVYPPLSSN 397
T Y P S++
Sbjct: 156 TFYTPYSAH 164
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 49.2 bits (112), Expect = 4e-05
Identities = 35/128 (27%), Positives = 45/128 (35%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
I S NH D+ LY +L P L D +YN VT H
Sbjct: 4 IMSVNHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMV 61
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N L+P PD+ FPR+N + F ++ + A G
Sbjct: 62 FFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSF-----WLMPFSLSLLLFSMASAGW 116
Query: 371 TVYPPLSS 394
T YPPLSS
Sbjct: 117 TFYPPLSS 124
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 49.2 bits (112), Expect = 4e-05
Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 1/127 (0%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ +HK IG +Y +L P + + YN I+T H
Sbjct: 21 TVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFF 80
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*T 373
N +VPL+LGA D+A PR+N + GA G T
Sbjct: 81 FIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT 140
Query: 374 VYPPLSS 394
Y P S+
Sbjct: 141 FYYPFSA 147
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 48.8 bits (111), Expect = 5e-05
Identities = 28/92 (30%), Positives = 39/92 (42%)
Frame = +2
Query: 122 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 301
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 302 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN 397
I N T T YPP S N
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN 93
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 48.4 bits (110), Expect = 7e-05
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +2
Query: 152 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 331
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 332 XXXIVENG-AGTG*TVYPPLSSNIAHXGRSVDLAI 433
G AG G T Y PLS+N+ G L +
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVV 180
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 48.0 bits (109), Expect = 9e-05
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 6/145 (4%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXX 184
+T+HK IG LY EL G I + IYN +T H
Sbjct: 15 TTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLI 74
Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF-XXXXXXXXXXXXXXIVENGAG 361
N L+P+++G +++ PR+N I F ++
Sbjct: 75 MLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPIS 134
Query: 362 TG*TVYPPLSSNIA-HXGRSVDLAI 433
+G T+YPPLS+ A + G ++DL++
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSL 159
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 47.6 bits (108), Expect = 1e-04
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +2
Query: 2 RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAH 175
+K +Y+ NHK I Y EL +P S GD Y +VTAH
Sbjct: 52 KKYVYTINHKRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAH 111
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 298
N L+P +G+ D+A+PR+N+I F
Sbjct: 112 GLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 47.2 bits (107), Expect = 2e-04
Identities = 34/126 (26%), Positives = 47/126 (37%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+TNHKDIG LY EL + G+ + YN V+ H
Sbjct: 19 TTNHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFW 78
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N LVPL +GA D+AFPR+N + + G T+
Sbjct: 79 FISPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTM 137
Query: 377 YPPLSS 394
Y PL++
Sbjct: 138 YAPLNT 143
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 46.8 bits (106), Expect = 2e-04
Identities = 32/126 (25%), Positives = 44/126 (34%)
Frame = +2
Query: 14 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
+ +HK IG Y EL P ++YN ++T H
Sbjct: 23 FCVDHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIF 82
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+PL++G D+AFPR+N + F V G T
Sbjct: 83 LWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWT 140
Query: 374 VYPPLS 391
YPPLS
Sbjct: 141 SYPPLS 146
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 46.8 bits (106), Expect = 2e-04
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 2/127 (1%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ +HKDIG LY EL + +YN ++T+H
Sbjct: 65 TVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFL 124
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG* 370
N +PL++ A D+AFPRIN I F ++ A T
Sbjct: 125 FGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSW 183
Query: 371 TVYPPLS 391
T+Y PLS
Sbjct: 184 TMYTPLS 190
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 46.4 bits (105), Expect = 3e-04
Identities = 31/138 (22%), Positives = 49/138 (35%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
+ + +HK IG +Y +L P + +++N + T H
Sbjct: 27 VSTLDHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMV 86
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N VPL++GA D+AFPR+N+ F + + G
Sbjct: 87 FLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGW 145
Query: 371 TVYPPLSSNIAHXGRSVD 424
Y PLSS + VD
Sbjct: 146 FSYVPLSSKAYSSLQGVD 163
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 44.8 bits (101), Expect = 8e-04
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Frame = +2
Query: 14 YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
++T+ K IG Y EL P + + D +YN + T H
Sbjct: 32 FNTDAKVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLF 91
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG* 370
N L+P ++GAPD+AFP++N F G A +G
Sbjct: 92 LFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGW 150
Query: 371 TVYPPLS 391
YPP+S
Sbjct: 151 WSYPPMS 157
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 44.8 bits (101), Expect = 8e-04
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 146 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 325
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 326 XXXXXIVE-NGAGTG*TVYPPLS 391
+ +GA G T YPPLS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLS 168
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 44.4 bits (100), Expect = 0.001
Identities = 30/125 (24%), Positives = 44/125 (35%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+T+HK IG +Y +LG P + +YN + T H
Sbjct: 28 TTDHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFL 87
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +VPL++GA D+AFPR+N + V G
Sbjct: 88 GLMPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFA 146
Query: 377 YPPLS 391
Y PL+
Sbjct: 147 YAPLT 151
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 43.6 bits (98), Expect = 0.002
Identities = 31/136 (22%), Positives = 48/136 (35%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ NH D+G ++ A+L P S + YN + T H
Sbjct: 26 TVNHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFL 85
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+P +LG+ D+AFPR+ F + +G +
Sbjct: 86 FAIPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFM 144
Query: 377 YPPLSSNIAHXGRSVD 424
YPPLSS + G + D
Sbjct: 145 YPPLSSTLGAPGINSD 160
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 43.6 bits (98), Expect = 0.002
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXX 187
++ST+H D+G LY AEL PG+ I D +N + T H
Sbjct: 15 MFSTHHTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHG-TT 73
Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 298
N VP+++ D+A+P++N I F
Sbjct: 74 LIFLFILPFASAVGNYFVPIMVRYKDMAYPKLNAIAF 110
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 43.2 bits (97), Expect = 0.002
Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 2/127 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSL-IGDDQIYNTIVTAHAXXX 187
++S + K I Y +LG PG+ D Y +T H
Sbjct: 33 VFSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIM 92
Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGT 364
N L+PL++GA D+ FP +N + + V G G
Sbjct: 93 VIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGA 152
Query: 365 G*TVYPP 385
G T+YPP
Sbjct: 153 GWTLYPP 159
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 42.3 bits (95), Expect = 0.004
Identities = 35/138 (25%), Positives = 47/138 (34%), Gaps = 1/138 (0%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXX 193
+ +HK IG Y +L P + IG D+ YN I T H
Sbjct: 26 TVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMF 84
Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
LVPL++G IAFPR+N + V+ G G
Sbjct: 85 LFAVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWF 143
Query: 374 VYPPLSSNIAHXGRSVDL 427
Y PLS G+ D+
Sbjct: 144 AYVPLSGPQYAAGKRADI 161
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 42.3 bits (95), Expect = 0.004
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +2
Query: 341 IVENGAGTG*TVYPPLSSNIAHXGRSVDLAI 433
+VE G G G TVYPPL+S + H G SVD AI
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAI 42
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 41.9 bits (94), Expect = 0.006
Identities = 32/135 (23%), Positives = 43/135 (31%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+T+HK IG LY +L P + YN ++T HA
Sbjct: 29 TTDHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFF 88
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +PL LG D+A PR+N G T
Sbjct: 89 FLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTF 148
Query: 377 YPPLSSNIAHXGRSV 421
Y PL+ + G SV
Sbjct: 149 YYPLTMDGNQTGVSV 163
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 41.9 bits (94), Expect = 0.006
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGN--PGSLIGD---DQIYNTIVTAHAX 181
+TN IG LY + N PGS + D + +Y ++ H
Sbjct: 11 TTNAHYIGILYILLSIINFVLAGIAAMYMRLTIANTPPGSPVQDPFNELLYTWFMSLHGL 70
Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGA 358
N LVP ++GAPD+ +PRIN + F + ++G
Sbjct: 71 GMLLLFAMQAVAGAA-NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGD 129
Query: 359 GTG*TVYPPLSS 394
G T+YPPLS+
Sbjct: 130 SIGWTLYPPLST 141
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 41.5 bits (93), Expect = 0.007
Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 3/128 (2%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIG--DDQIYNTIVTAHAXXX 187
S +HK IG +Y +L G G + Y+ I TAH
Sbjct: 52 SVDHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTAHGVIM 111
Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
N +VPL +GA D+AFP +N++ F V N A TG
Sbjct: 112 IIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTG 170
Query: 368 *TVYPPLS 391
YPPL+
Sbjct: 171 WVAYPPLA 178
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 40.3 bits (90), Expect = 0.017
Identities = 23/92 (25%), Positives = 37/92 (40%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
+ + +HK IG +Y +L PG + + +N + T HA
Sbjct: 24 VATVDHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMI 83
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 286
N +PL++GA D+AFPR+N
Sbjct: 84 FLGVMPLLSAFM-NYFLPLMIGARDVAFPRLN 114
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 40.3 bits (90), Expect = 0.017
Identities = 28/136 (20%), Positives = 49/136 (36%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ NH D+G ++ A+L +P S + Y + T H
Sbjct: 26 TVNHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFL 85
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+P +LG+ D+A+PR++ F + +G +
Sbjct: 86 FAIPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFM 144
Query: 377 YPPLSSNIAHXGRSVD 424
YPPL+S + G + D
Sbjct: 145 YPPLASTLGSPGINSD 160
>UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2;
Yarrowia lipolytica|Rep: Cytochrome c oxidase subunit I
- Yarrowia lipolytica (Candida lipolytica)
Length = 399
Score = 39.5 bits (88), Expect = 0.030
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 178
++STN KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 11 LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHA 68
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 39.1 bits (87), Expect = 0.040
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 2/138 (1%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAE--LGNPGSLIGDDQIYNTIVTAHAXXXX 190
ST+HK IG +Y A+ +G G + D + + + H
Sbjct: 73 STDHKKIGIMYVVLALVMLTRAIAEAVLMRAQGAVGLGGGFLSSDH-FAQLFSTHGTIMI 131
Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
N +VPL +GA D+AFP +N+I +V + G
Sbjct: 132 FFMAMPFLTGLI-NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGW 190
Query: 371 TVYPPLSSNIAHXGRSVD 424
YPP + + + G VD
Sbjct: 191 FGYPPYTETLYNPGIGVD 208
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 39.1 bits (87), Expect = 0.040
Identities = 24/66 (36%), Positives = 27/66 (40%)
Frame = +1
Query: 223 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 402
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 403 TXRKIR 420
T R
Sbjct: 122 TLGPFR 127
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 39.1 bits (87), Expect = 0.040
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 178
+YSTN KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 38.7 bits (86), Expect = 0.053
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 157
++STNHKDIGTLY EL PG+ I G+ Q+YN
Sbjct: 9 LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 38.7 bits (86), Expect = 0.053
Identities = 38/144 (26%), Positives = 51/144 (35%), Gaps = 5/144 (3%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAEL-----GNPGSLIGDDQIYNTIVTAHAX 181
+ +HK IG +Y +L G+ G L + Y+ I TAH
Sbjct: 51 TVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGV 108
Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG 361
N VPL +GA D+AFP +N++ F V A
Sbjct: 109 IMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAK 167
Query: 362 TG*TVYPPLSSNIAHXGRSVDLAI 433
TG YPPL+ G VD I
Sbjct: 168 TGWVAYPPLAGIQYSPGVGVDYYI 191
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 38.3 bits (85), Expect = 0.070
Identities = 30/125 (24%), Positives = 42/125 (33%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
S +HK IG LY L +P + +YN +VT H
Sbjct: 107 SLDHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFF 166
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +P+ L D+ PR+N++ G G G T+
Sbjct: 167 FLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTL 224
Query: 377 YPPLS 391
YPPLS
Sbjct: 225 YPPLS 229
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 37.9 bits (84), Expect = 0.092
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 230 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 391
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLS 172
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 37.9 bits (84), Expect = 0.092
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +2
Query: 146 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 325
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 326 XXXXXIVENGAGTG*TVYPPLS 391
G G T YP L+
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLA 171
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 37.9 bits (84), Expect = 0.092
Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 11/139 (7%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG------SLIG----DDQIYNT 160
I++TNHK IG LY +L P S+ D YN
Sbjct: 27 IFTTNHKQIGLLYILTSLFFFIGGGVMALLMRVQLAIPRYDLVKYSIFSGRFLDALQYNQ 86
Query: 161 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 340
+VT H L+PL +G+ D+ +PR+N + +
Sbjct: 87 LVTIHGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGF 145
Query: 341 IVENG-AGTG*TVYPPLSS 394
+ G TG TVY PLSS
Sbjct: 146 FLPGGNLDTGWTVYEPLSS 164
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 37.1 bits (82), Expect = 0.16
Identities = 30/139 (21%), Positives = 46/139 (33%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ +HK I LY +L P + Q YN ++T H
Sbjct: 21 TVDHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +VPL +GA D++FP +N + F + G T
Sbjct: 81 AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139
Query: 377 YPPLSSNIAHXGRSVDLAI 433
Y LS + G +D +
Sbjct: 140 YASLS--LHSKGHGIDFFV 156
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 36.3 bits (80), Expect = 0.28
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +2
Query: 116 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 295
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 296 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS 394
F + +G +G T Y LS+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSA 167
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 35.9 bits (79), Expect = 0.37
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 140 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 319
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 320 XXXXXXXIVENGAGTG-*TVYPPLSS 394
+E G +G +YPPLS+
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSA 183
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 35.9 bits (79), Expect = 0.37
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 157
++STNHKDIGT Y EL PG+ I G+ Q+YN
Sbjct: 9 LFSTNHKDIGTPYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 35.5 bits (78), Expect = 0.49
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 217 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 342
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 35.1 bits (77), Expect = 0.65
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 7 MNLFYKS*RYWNIIFYFWYLIRNNWNIFKTFNS 105
M + KS YWNI+F+FWYLI ++ K NS
Sbjct: 339 MIILNKSQSYWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 34.3 bits (75), Expect = 1.1
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIV 166
+YSTN KDI LY EL PGS L G+ Q++N +V
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 33.1 bits (72), Expect = 2.6
Identities = 22/105 (20%), Positives = 37/105 (35%)
Frame = +2
Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
+L P + D + YN + + H ++PL+LG D+ FPR+N
Sbjct: 64 QLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRLNA 122
Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVD 424
+ ++ G YPPL+ G +D
Sbjct: 123 FGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLD 167
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 33.1 bits (72), Expect = 2.6
Identities = 25/136 (18%), Positives = 45/136 (33%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ +H+ +G + +L P + + YN + T H
Sbjct: 52 AVSHRAVGKRFLITGFIFFLIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFL 111
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+PL++GA D+ FPR+ + + + G +
Sbjct: 112 FAIPMLEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFM 170
Query: 377 YPPLSSNIAHXGRSVD 424
Y PLS++ G S D
Sbjct: 171 YVPLSTSAYTEGLSAD 186
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 32.7 bits (71), Expect = 3.5
Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 1/139 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIGDDQIYNTIVTAHAXXX 187
I + N++ IG LY +L P L+G D YN I T H
Sbjct: 34 ISAVNNQVIGILYVGAAFLFFILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTM 92
Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
L+P +L A D+ FPR++ + G
Sbjct: 93 MFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGG 151
Query: 368 *TVYPPLSSNIAHXGRSVD 424
+YPPL+ G + D
Sbjct: 152 WFMYPPLTLKEYSPGDNAD 170
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 32.7 bits (71), Expect = 3.5
Identities = 28/137 (20%), Positives = 46/137 (33%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ +HK IG Y +L P + + Y+++ T H
Sbjct: 46 TVDHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFL 105
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N L PL+LG+ D+AFPR+ + + G
Sbjct: 106 YALPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFN 164
Query: 377 YPPLSSNIAHXGRSVDL 427
Y PL+S G ++D+
Sbjct: 165 YVPLTSLDYSAGANIDI 181
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 32.3 bits (70), Expect = 4.6
Identities = 24/135 (17%), Positives = 44/135 (32%)
Frame = +2
Query: 17 STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
+ N+ ++G Y +L PG+ +N T H
Sbjct: 54 AVNNSEVGVWYALTALAFMLCAGVLAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFL 113
Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+P +LGA D+ FPR++ + + + +G +
Sbjct: 114 FAVPMFEAISII-LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFM 172
Query: 377 YPPLSSNIAHXGRSV 421
YPPL++ G +
Sbjct: 173 YPPLATQDEGLGSDI 187
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 4.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 307 TPLPYIINFKKNCRKWCRN 363
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 32.3 bits (70), Expect = 4.6
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 11 IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTA 172
+YSTN KDI LY EL PGS L G+ Q++N T+
Sbjct: 6 LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_Q0BZ17 Cluster: Amidohydrolase family/endoribonuclease
L-PSP; n=1; Hyphomonas neptunium ATCC 15444|Rep:
Amidohydrolase family/endoribonuclease L-PSP -
Hyphomonas neptunium (strain ATCC 15444)
Length = 755
Score = 31.9 bits (69), Expect = 6.0
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 372 VHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISG-APSIRG 241
+H AP+S + + + ++R+G S ++ + GN I+G AP + G
Sbjct: 164 LHRYGAPYSILNVRVLDVRDGSLSAPSVVTVSGNVITGVAPYVEG 208
>UniRef50_Q4D974 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 1952
Score = 31.5 bits (68), Expect = 8.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 423 STDLPXCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAPSI 247
S D A+L S T++P + E+N+ R+GG QN +L G + AP++
Sbjct: 102 SVDAEGIALLIRSLHATLNPFSHDSRVAVDELNSGRDGGNQQNRLLAAEGIGTTAAPAV 160
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 31.5 bits (68), Expect = 8.0
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 110 ELGNPGSLIGDDQIYNTIVTAHA 178
EL GS++ +QIYNT+VT+HA
Sbjct: 24 ELETCGSVLRSEQIYNTLVTSHA 46
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,596,560
Number of Sequences: 1657284
Number of extensions: 5327348
Number of successful extensions: 10711
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 10360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10637
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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