Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M03
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      28   3.8  
SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.0  
SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)                 27   6.7  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   27   8.8  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   8.8  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           27   8.8  

>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 312 GGRSQNLILFIRGNAISGAPSI 247
           GG S+NLI F  G  I G PS+
Sbjct: 99  GGESKNLINFALGQDIGGVPSV 120


>SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/65 (23%), Positives = 24/65 (36%)
 Frame = -3

Query: 273 NAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSARIKS 94
           NA+  +P + GTN  P P                ++  V        + PG  N +R  S
Sbjct: 68  NAVISSPQMNGTNGSPTPQSGKKTPSIRSGSSTSSIEFVRRHSFDADSGPGSANVSRFSS 127

Query: 93  LKDVP 79
            + +P
Sbjct: 128 FRVIP 132


>SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)
          Length = 544

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 333 EINNIREGGRSQNLILFIRGNAISGAPSIRGTN 235
           EI N+ + G   ++   ++G+ I+ AP+IRGT+
Sbjct: 424 EIVNVTDDGGVDHVAGRVKGHVIAIAPAIRGTD 456


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 423 STDLPXCAILDESGG*TVHPVPAPFS 346
           +TD+    + D +GG T+ PVP P S
Sbjct: 547 NTDIVTTLVTDFAGGLTITPVPDPVS 572


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 282 IRGNAISGAPSIRGTNQFPNPP 217
           + GN  S AP I G + FP PP
Sbjct: 335 LSGNLASTAPVISGQSSFPAPP 356


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 384  GG*TVHPVPAPFSTILLEINNIREGGRSQNLILFI 280
            GG  V P P  F  +LLE+  + E G    L+  I
Sbjct: 1319 GGLFVAPNPIDFDVVLLELTRLDESGNVAVLVTII 1353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,072,461
Number of Sequences: 59808
Number of extensions: 152419
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)