Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M02
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.098
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 29 0.40
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 29 0.52
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.52
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 0.91
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.91
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 27 1.6
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 27 2.1
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 3.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.7
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 3.7
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 26 4.9
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 6.4
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 25 6.4
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 6.4
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 8.5
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 8.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 8.5
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.098
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = -1
Query: 525 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTS 346
SAS TPLT SV S A SA +TST +S +++ + LP+++++S
Sbjct: 369 SASSTPLT-SVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
Query: 345 VPLSNSS 325
PLS+++
Sbjct: 423 TPLSSAN 429
Score = 31.5 bits (68), Expect = 0.098
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = -1
Query: 525 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTS 346
SAS TPLT SV S A SA +TST +S +++ + LP+++++S
Sbjct: 483 SASSTPLT-SVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 536
Query: 345 VPLSNSS 325
PLS+++
Sbjct: 537 TPLSSAN 543
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = -1
Query: 450 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQV 271
P+S S FCS +S+ C+++ T + L + N + F + + L
Sbjct: 50 PSSDISEFCSLIDFISQTCNYYHDVTADFPSELIELLQKNHTIFPFELCEKIVL-----C 104
Query: 270 ILMFCPSTTLASLVILACTFPV 205
+++ T ++ + +L C FP+
Sbjct: 105 LVLLKNKTVISPITLLQCFFPL 126
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 0.52
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 438 RSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLY---FHVTSEYGLPINLQ 274
++ FC + C F+ R+PS L V + +FL F ++ E + INLQ
Sbjct: 12 KNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.52
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Frame = -1
Query: 525 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRP-----------CSFFSS 379
S S T L++S +S + P+S S+ S+ST+LS P S S
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG 645
Query: 378 CTRLPSTALTSVPLSNSSFLY 316
+ + S++++++P+S+S Y
Sbjct: 646 SSSILSSSISTIPISSSLSTY 666
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 290 KPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERAD 445
KP+ + WK KKD +D T V G +L +N+ + + V L+ +R +
Sbjct: 375 KPFEKQFWKIKKDLMD--TVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVN 424
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 0.91
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -1
Query: 423 STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTS-EYGLPINLQVILMFCPST 247
++STV++ SS T ST +TS + NSS T+ PI +L ST
Sbjct: 3289 TSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLN--SST 3346
Query: 246 TLASLVILACTFPVTIQALI 187
+ S IL + PVT +++
Sbjct: 3347 AITSSSILNSSTPVTSSSVL 3366
Score = 25.4 bits (53), Expect = 6.4
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 423 STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGL----PINLQVILMFC 256
++STV++ SS ST +TS + NSS +TS GL PI +L
Sbjct: 901 TSSTVVNSSTPITSSTALNTSTPITSSSVLNSS---TPITSSTGLNTSTPITSSSVLN-- 955
Query: 255 PSTTLASLVILACTFPVT 202
ST + S +L + P+T
Sbjct: 956 SSTPITSSTVLNSSTPIT 973
Score = 25.0 bits (52), Expect = 8.5
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Frame = -1
Query: 513 TPLTLS-VTSAGVP---PAGLHWYRPASARSAFCST-----STVLSRPCSFFSSCTRLPS 361
TP+T S V ++ P GL+ P ++ S S+ STVL+ SS S
Sbjct: 922 TPITSSSVLNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTS 981
Query: 360 TALTSVPLSNSSF-LYFHVTSEYGLPINLQVILMFCPSTTLASLVILACTFPVTIQALI 187
T +TS + NSS + PI +L ST + S L + P+T +++
Sbjct: 982 TPITSSSVLNSSTPITSSSVLNTSTPITSSSVLN--SSTAITSSTALNTSTPITSSSVL 1038
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 227 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSA-VLGSRVQLEKNEQGL 403
+T + +++ Q I + +P+ +W +E + +S V+G R++L+K + GL
Sbjct: 108 VTGEGGLMDAQLITAEADNLTRPHW-TSWTENSEEFPSSLVMSTGVIGQRLKLDKIQSGL 166
Query: 404 DNTV 415
++ V
Sbjct: 167 EHAV 170
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/47 (21%), Positives = 21/47 (44%)
Frame = +2
Query: 395 QGLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPF 535
+ + NT+ + +N + D + +D T +K ++ WPF
Sbjct: 28 ESVSNTISLSENGQNQDLETVTTKESNVGDSDTTENIKSPFNGQWPF 74
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 492 TSAGVPPAGLHWYRPAS 442
T A +PP GL WYR S
Sbjct: 54 TKAKLPPFGLEWYRGCS 70
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 40 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 204
++Q+ S+ +PQ Q P Q Q + + RQLH Q+P T S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 255 PSTTLASLVILACTFPVTIQALICPVW 175
PST LAS I + P +I+ + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 74 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTG 184
+KE EL G G SNEDD+ + C ++ G
Sbjct: 11 MKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG 47
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 510 PLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTA 355
PL ++ + VPP H P+ A S T S+P FSS + +P T+
Sbjct: 275 PLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQFSS-SFVPGTS 325
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -1
Query: 318 YFHVTSEYG-LPINLQVILMFCPSTTLASLVILACTFPVTIQ--ALICPVWF 172
Y HV S Y + + L +I+ + + V++A F I + ICP+WF
Sbjct: 247 YIHVFSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWF 298
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 167 LKNQTGHIKAWMVTGNVHAKMTKDANVVE 253
+K H +AW G +H + ++ VVE
Sbjct: 321 VKENPQHFEAWKWLGRIHTLLGNESRVVE 349
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 258 CPSTTLASLVILACTFPVTIQALIC 184
CPS S + A FPVT IC
Sbjct: 350 CPSRNKTSWAVSANAFPVTPNTTIC 374
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 134 NEDDYGNYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIKITCKL 283
+E D + G+KN I A + ++ EG+NIKI CK+
Sbjct: 199 SEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKNIKIICKI 248
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 450 PASARSAFCSTSTVLSRPCSFFSSCTRLP 364
P +A+SAF S P +FF S LP
Sbjct: 830 PTAAKSAFTRKYNSSSHPIAFFGSSDVLP 858
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,114
Number of Sequences: 5004
Number of extensions: 33338
Number of successful extensions: 207
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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