Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M02
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74120.1 68414.m08584 mitochondrial transcription termination... 29 2.4
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin... 29 3.1
At1g63530.1 68414.m07182 hypothetical protein 29 3.1
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei... 28 5.5
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei... 28 5.5
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 28 5.5
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 7.2
At3g04350.1 68416.m00460 expressed protein 27 7.2
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 27 7.2
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal... 27 9.6
At3g19870.1 68416.m02516 expressed protein 27 9.6
At1g64910.1 68414.m07358 glycosyltransferase family protein cont... 27 9.6
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 27 9.6
>At1g74120.1 68414.m08584 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 445
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 17 DSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDY 148
D+F++VWK+ V L E+ ++++ E + F I ++ +Y
Sbjct: 301 DAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEY 344
>At3g30710.1 68416.m03897 hypothetical protein similar to
Arginine-tRNA-protein transferase 1 (EC
2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
(Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
musculus}; similar to MRP homologs in mycobacteria
(SP:P53382), which belong to the MR?/NBP35 family of
ATP-binding proteins.
Length = 523
Score = 28.7 bits (61), Expect = 3.1
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +2
Query: 137 EDDYG--NYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 310
ED+ G N C +K Q + V V A D V EG+ I IT KLI Y ++
Sbjct: 420 EDEAGLANLLCHIKGQNYQVPG--VKNMVEAATYADMVVKEGREIAITNKLIALYYQHLS 477
Query: 311 WKYKKD--ELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQ 427
D + DNG D G+R + + +N V+ L+
Sbjct: 478 -NVSPDAYQGDNG-DCEVRSGARGFVPGKDLQTENGVVYLE 516
>At1g63530.1 68414.m07182 hypothetical protein
Length = 499
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 251 EGQNIKITCKLIGKPYSEVTWKYKKDELDNGT 346
EGQNI + K + E+ W+Y K E G+
Sbjct: 279 EGQNISSFKPYVDKSHDELRWEYYKKEAKGGS 310
>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 740
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 390 TSRAWTTPCWCCRTRSAPTPACTSAARPGARPPTSRSGSRACTTRSGP 533
T R+ ++P CRT A TP + P + + R A + S P
Sbjct: 56 TPRSTSSPSLRCRTADAQTPTAEQTSTPRSATKSPRLSLAAISNPSSP 103
>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 294
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/100 (21%), Positives = 42/100 (42%)
Frame = +2
Query: 218 HAKMTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQ 397
HAK + +G + + ++ PYS ++ +E+D G D S S L + +
Sbjct: 107 HAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFPVYAEEIDAGGDASP---STAMLSEVSK 163
Query: 398 GLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVY 517
L T++ ER LY G+ ++ + + ++
Sbjct: 164 RLKITIIGGSIPERVGDRLYNTCCVFGSDGELKAKHRKIH 203
>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 369
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/100 (21%), Positives = 42/100 (42%)
Frame = +2
Query: 218 HAKMTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQ 397
HAK + +G + + ++ PYS ++ +E+D G D S S L + +
Sbjct: 107 HAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFPVYAEEIDAGGDASP---STAMLSEVSK 163
Query: 398 GLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVY 517
L T++ ER LY G+ ++ + + ++
Sbjct: 164 RLKITIIGGSIPERVGDRLYNTCCVFGSDGELKAKHRKIH 203
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 27.9 bits (59), Expect = 5.5
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = +2
Query: 173 NQTG-HIKAWMVTGN----VHAKMTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELD 337
+ TG H+KA V + V ++ K V E + K+T ++I P +E T + +EL
Sbjct: 719 SSTGEHLKALAVESSNADSVFQQLDKLRAVFEEYS-KLTTEII--PLAEKTLQEHTEELG 775
Query: 338 NGTD-VSAVLGSRVQLEKNEQGLDNTVLVLQNAER 439
++ + VLG Q++ ++ ++ V L+NA+R
Sbjct: 776 QKSEALDDVLGISAQIKADKDSIEALVQPLENADR 810
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 423 CRTRSAPTPACTSA----ARPGARPPTSRSGSRACTTRSGP 533
C R P PA T+ RP + P T+ +G R C S P
Sbjct: 45 CHHRRPPLPATTAGHHRQLRPPSIPVTTNTGHRHCRPPSNP 85
>At3g04350.1 68416.m00460 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 330 SSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILACTFPVT 202
SS LY HV G V+ +FCP A+L I T P+T
Sbjct: 345 SSELYVHVKPALGGTFTDIVMWIFCPFNGPATLKIGLFTLPMT 387
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 31 RMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRL 147
+ +++Q+ R GG +GA+ P+Q + + Q RGR+
Sbjct: 492 QQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRM 530
>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
catalytic subunit, putative similar to SP|O48653 DNA
polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
sativa}; contains Pfam profiles: PF03175 DNA polymerase
type B, organellar and viral, PF00136 DNA polymerase
family B, PF03104 DNA polymerase family B, exonuclease
domain
Length = 1492
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 35 WKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKN 175
+++ VP GE LK Y +++ L +KG S G++T L++
Sbjct: 459 FERPDVPAGEQYVLKINYSFKDRPLPEDLKGESFSALLGSHTSALEH 505
>At3g19870.1 68416.m02516 expressed protein
Length = 1117
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 308 TWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAG 451
+W L GTD +++ +++Q+++ E + +L A R ++G
Sbjct: 691 SWSLSLPSLSVGTDGYSIIENKIQVDEVEPDGSQELQILPEARRIESG 738
>At1g64910.1 68414.m07358 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 447
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 287 GKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNE 394
GKP + W + + + G+ V LGS+V LEK++
Sbjct: 234 GKPLED-RWSHWLNGFEQGSVVFCALGSQVTLEKDQ 268
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 276 QVILMFCPSTTLASLVILAC 217
Q L F PST A+LV+LAC
Sbjct: 522 QTQLCFWPSTVAAALVVLAC 541
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,154
Number of Sequences: 28952
Number of extensions: 189649
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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