Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M01
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.4  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 24  WKVVANTRCLGENFLASXGYPA 89
           WK+  ++RCLG   L S G PA
Sbjct: 135 WKMNQSSRCLGNLDLPSLGIPA 156


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 544 PSRTPQLPSPTVPVTLLVTANGL 612
           P RTP LP  T+P T  V+A GL
Sbjct: 15  PGRTPHLPPLTIPHT--VSAEGL 35


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 532 DPTHPSRTPQLPSPTVPVTLLVTAN 606
           DP++P+ T   P P  P+  L+  N
Sbjct: 143 DPSNPNATSSSPPPLTPILELIKQN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,278
Number of Sequences: 5004
Number of extensions: 27165
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)