Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M01
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)                    29   3.9  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   6.7  
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
          Length = 723

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 339 GYGGYASDAHYGAPAAGLYKYG 404
           GYGGY S   +G P  GLY YG
Sbjct: 185 GYGGYNSYG-FGYPYGGLYSYG 205


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 611 WSPGSHSTDPRRPIRS----RHP*GTTRKSIPLGSIPRCRP 721
           +S   H T PRRP++S    RH  GT + S     + R RP
Sbjct: 485 YSEAVHQTGPRRPVKSTPTKRHNEGTEQSSRAEHQVERGRP 525


>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 333 SPGYGGYASDAHYGAPAAGLYKYGPAP 413
           +P  GGY +  H   P AG   YGP P
Sbjct: 630 APPAGGYPTGQHPPPPPAGYPGYGPPP 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,091,978
Number of Sequences: 59808
Number of extensions: 237895
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)