Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M01
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04170.1 68418.m00405 calcium-binding EF hand family protein ...    33   0.15 
At1g03600.1 68414.m00340 photosystem II family protein similar t...    29   2.4  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    29   3.2  
At5g23120.1 68418.m02704 photosystem II stability/assembly facto...    29   4.2  
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    29   4.2  
At2g25970.1 68415.m03117 KH domain-containing protein                  27   9.6  
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    27   9.6  

>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
           similarity to peflin [Homo sapiens] GI:6015440; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 354

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 STSHGAWSPGYGGYASDAHYGAPAAGLYKYGPAP 413
           S+ HG    GYGGY   A YG+P A L   G AP
Sbjct: 152 SSGHGG---GYGGYPPQASYGSPFASLIPSGFAP 182


>At1g03600.1 68414.m00340 photosystem II family protein similar to
           SP:P74367 {Synechocystis sp.}; similar to ESTs
           emb|Z27038, gb|AA451546, emb|Z29876, gb|T45359 and
           gb|R90316
          Length = 174

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 165 LAATLCLAQASYYLGAPAPIQLSPDGKYVLDTPEV 269
           LAAT  L   S    APAP+  + D +Y+ DT  V
Sbjct: 47  LAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAV 81


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 333 SPGYGGYASDAHYGA--PAAGLYKYGPA--PLAHDG 428
           +PGYGGY     YG   PA G   Y PA  P  H G
Sbjct: 64  APGYGGYPPAPGYGGYPPAPGHGGYPPAGYPAHHSG 99


>At5g23120.1 68418.m02704 photosystem II stability/assembly factor,
           chloroplast (HCF136) identical to SP|O82660 Photosystem
           II stability/assembly factor HCF136, chloroplast
           precursor {Arabidopsis thaliana}
          Length = 403

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 183 LAQASYYLGAPAPIQLSPDGKYV 251
           ++ ASYY G  + +  SPDG+YV
Sbjct: 239 ISGASYYTGTFSAVNRSPDGRYV 261


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 318 SHGAWSPGYGGYASDAHYGAPAAGLYKYGPAPLAHDG 428
           S G  +PGYG  A+ + YG P A      P+  ++ G
Sbjct: 305 SSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQG 341


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 336 PGYGGYASDAHY-GAPAAGLYKYGPAP 413
           PGYGGY     Y G P  G   YG  P
Sbjct: 340 PGYGGYMQPGAYPGPPQYGQSPYGSYP 366


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 324 GAWSPGYGGYASDAHYGAPAAG 389
           G   PG G  ASD  YGAPA G
Sbjct: 120 GFGGPGGGYGASDGGYGAPAGG 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,421
Number of Sequences: 28952
Number of extensions: 157554
Number of successful extensions: 553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)