Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L24
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   204   7e-54
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    28   1.4  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   4.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   5.6  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   9.9  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  204 bits (499), Expect = 7e-54
 Identities = 107/222 (48%), Positives = 138/222 (62%), Gaps = 3/222 (1%)
 Frame = +2

Query: 14  AGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLKRGE--T 187
           AGLP+S  C TVNKVCASGMK+ +L AQ + TG   I++AGG ESMSN P+Y  +     
Sbjct: 75  AGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAPYYAPKNRFGA 134

Query: 188 SYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEA 367
            YG ++LVDG++ DGL+D Y+   MGN AE  A++  I R  QD +A++SYKR+  A   
Sbjct: 135 KYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISSYKRAQNAQAT 194

Query: 368 KAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLN 544
           KAF  E+VPV VP  RG P  +  EDEE K +N +K   +  VF K NGTVTA NASTLN
Sbjct: 195 KAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLN 253

Query: 545 DGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
           DG            K L +KP+A+I+G+ +   DP  F   P
Sbjct: 254 DGASALVLMSAAKVKELGLKPLAKIIGWGEAAQDPERFTTSP 295


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 44  TVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSN 157
           T    CA+G  +I  A   ++ G   +I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 425 VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDG 550
           +IF+ED+E   ++F++F   S +    N  +    AS L  G
Sbjct: 445 LIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTG 486


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 311 DQDEYAVNSYKRSAAAYEA-KAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEK 472
           ++ +YA +S +  A  YE  K  +  L+ +PV Q     VIF   + Y RV  EK
Sbjct: 208 NESDYA-SSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEK 261


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 240 MCTTNFTWEIVLKTQQKNYKLLDKIKMNMLSIVTREV 350
           +  + + W +  KT++  YKL+    M + S+V  E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 481 FCKLFKINSFILFIFSKYYRSPSFLW 404
           F KLF+I+ +IL +FS Y    +  W
Sbjct: 73  FSKLFRISLYILGVFSLYMFRWAIAW 98


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 392 PVPVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVFQKENGTV 517
           P+PVP    + V      + KR+  E FT LS + +   G V
Sbjct: 656 PIPVPSVETSVVAQDLTHKAKRIGLEDFTFLSVLGKGNFGKV 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,522
Number of Sequences: 5004
Number of extensions: 45943
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)