Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L24
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 186 1e-47
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 145 3e-35
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 89 2e-18
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 88 7e-18
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819 31 0.63
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 29 3.3
03_06_0064 + 31395168-31395223,31396906-31397368,31397440-313975... 29 4.4
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 186 bits (453), Expect = 1e-47
Identities = 103/226 (45%), Positives = 134/226 (59%), Gaps = 3/226 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLK-- 175
A + AG+P + C VNKVCASGMK+ M AAQ + G I++AGGMESMSN P Y+
Sbjct: 76 AALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMSNAPKYIAEA 135
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + +G LVDG++ DGL DVY F MGNCAE A +TR+DQD YA+ S +R A
Sbjct: 136 RKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQDAYAIQSNERGIA 195
Query: 356 AYEAKAFVDELVPVPVPQKRG-APVIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNA 532
A + AF E+VP+ VP RG PV+ +DE + + K KL F++ GTVTAGNA
Sbjct: 196 ARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPSFKENGGTVTAGNA 255
Query: 533 STLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
S+++DG + L ++ IARI GFAD P F P
Sbjct: 256 SSISDGAAALVLVSGQKAQELGLQVIARIKGFADAAQAPELFTTSP 301
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 145 bits (351), Expect = 3e-35
Identities = 88/225 (39%), Positives = 124/225 (55%), Gaps = 2/225 (0%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYL--K 175
A + AGLP + C TVNKVC+SGMK++MLAAQ +Q G +++AGGMESMSN P Y+
Sbjct: 82 AALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAPKYVAAA 141
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + +G L+DG++ DGL DVYN F MG CAE A + I+R++QD YA+ S +R+ A
Sbjct: 142 RRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYAIQSNERAIA 201
Query: 356 AYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNAS 535
A ++ F E+ PV + RG P + + +E + K T L + +
Sbjct: 202 ARDSGTFSWEIAPVEISSGRGKPPLIVDKDE----SLAKCTSLPSRLP----------SK 247
Query: 536 TLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
+DG K L ++ IARI G+AD P F P
Sbjct: 248 IRSDGAAAIVLVSGQKAKSLGLQVIARIRGYADAAQAPELFTTTP 292
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 89.4 bits (212), Expect = 2e-18
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 7/190 (3%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMS-NVPFYLKR 178
A +AG+P++ TVN+ C+SG++++ A ++ G I + G+ESMS N + +
Sbjct: 116 AAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMSVNAMGWEGQ 175
Query: 179 GETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAA 358
+Q + MG +EN A + +TRQ+QD+ A S++R+AAA
Sbjct: 176 VNPKVNEVQKAQDCLLP----------MGITSENVAHRYGVTRQEQDQAAAESHRRAAAA 225
Query: 359 YEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVT 520
A F DE+VPVP V K G VI +D KL VF+K+ GT T
Sbjct: 226 TAAGKFKDEIVPVPTKIVDPKTGEEKKVVISVDDGIRPGTTASGLAKLKPVFRKD-GTTT 284
Query: 521 AGNASTLNDG 550
AGN+S ++DG
Sbjct: 285 AGNSSQVSDG 294
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 87.8 bits (208), Expect = 7e-18
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 6/189 (3%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLKRG 181
A +AG P + TVN+ C+SG++++ A ++ G I +A G+ESM+
Sbjct: 118 AAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMTV-------N 170
Query: 182 ETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAY 361
+ G +F D MG +EN AK+ ITR +QD+ AV S++++AAA
Sbjct: 171 QVRLDGQVNPKVELFSQARDCL--LPMGLTSENVAKRFGITRMEQDQAAVESHRKAAAAA 228
Query: 362 EAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTA 523
+ F +E+VPV V K G V+ A+D + +KL F K+ GT TA
Sbjct: 229 ASGKFKEEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGTSLAVLSKLKPAFSKD-GTTTA 287
Query: 524 GNASTLNDG 550
GNAS ++DG
Sbjct: 288 GNASQVSDG 296
>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
Length = 598
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = -2
Query: 645 SHSPSANPTIRAIGL----TFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 484
S +P T++ IG+ + L+ SA++ T+ A F + P T+P SFW V
Sbjct: 429 SKNPRGITTLQRIGIGLIISVILMVVSALVETRRLMVARDFGLVDNPEATIPMSFWWVVP 488
Query: 483 NFV 475
F+
Sbjct: 489 QFI 491
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 112 SPXYNTCWWDGIYVKCTFLF 171
S Y+ CWW + V+C F F
Sbjct: 470 SDLYDRCWWPPVCVRCIFRF 489
>03_06_0064 +
31395168-31395223,31396906-31397368,31397440-31397598,
31397686-31397751,31397856-31397935,31397991-31398099
Length = 310
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 70 HEIYNVGSTRSTNWSPXYNTCWW 138
H + +G+ S +W P TC+W
Sbjct: 65 HALGGIGACSSVHWQPDRGTCYW 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,704
Number of Sequences: 37544
Number of extensions: 286044
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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