Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L24
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 197 6e-51
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 197 6e-51
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 186 2e-47
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 186 2e-47
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 186 2e-47
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 185 2e-47
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 95 3e-20
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 95 3e-20
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 87 1e-17
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 87 1e-17
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-... 29 3.7
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 3.7
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 3.7
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.9
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.9
At1g20060.1 68414.m02511 kinesin motor protein-related 28 6.5
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 27 8.5
At1g22540.1 68414.m02815 proton-dependent oligopeptide transport... 27 8.5
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 197 bits (480), Expect = 6e-51
Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 3/226 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLK-- 175
A + AG+P S C TVNKVCASGMK++M+AAQ +Q G +++AGGMESMSN P YL
Sbjct: 78 AALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGMESMSNTPKYLAEA 137
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + +G LVDG++ DGL DVYN MG+CAE A+K QITR+ QD+YAV S++R A
Sbjct: 138 RKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDDYAVQSFERGIA 197
Query: 356 AYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNA 532
A EA AF E+VPV V RG P I +DE + + K KL F++ GTVTAGNA
Sbjct: 198 AQEAGAFTWEIVPVEVSGGRGRPSTIVDKDEGLGKFDAAKLRKLRPSFKENGGTVTAGNA 257
Query: 533 STLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
S+++DG +L + +A+I G+ D +P F P
Sbjct: 258 SSISDGAAALVLVSGEKALQLGLLVLAKIKGYGDAAQEPEFFTTAP 303
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 197 bits (480), Expect = 6e-51
Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 3/226 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLK-- 175
A + AG+P S C TVNKVCASGMK++M+AAQ +Q G +++AGGMESMSN P YL
Sbjct: 73 AALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGMESMSNTPKYLAEA 132
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + +G LVDG++ DGL DVYN MG+CAE A+K QITR+ QD+YAV S++R A
Sbjct: 133 RKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDDYAVQSFERGIA 192
Query: 356 AYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNA 532
A EA AF E+VPV V RG P I +DE + + K KL F++ GTVTAGNA
Sbjct: 193 AQEAGAFTWEIVPVEVSGGRGRPSTIVDKDEGLGKFDAAKLRKLRPSFKENGGTVTAGNA 252
Query: 533 STLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
S+++DG +L + +A+I G+ D +P F P
Sbjct: 253 SSISDGAAALVLVSGEKALQLGLLVLAKIKGYGDAAQEPEFFTTAP 298
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 186 bits (452), Expect = 2e-47
Identities = 101/226 (44%), Positives = 137/226 (60%), Gaps = 3/226 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYL--K 175
A + AG+P S C T+NKVCA+GMKS+MLA+Q +Q G I++AGGMESMSNVP YL
Sbjct: 80 AALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLPDA 139
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + G +VDG++ DGL DVYN F MG C E A + +ITR++QD YA+ S++R A
Sbjct: 140 RRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQSFERGIA 199
Query: 356 AYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNA 532
A + F E+VPV V RG P V+ +DE + + K KL F+++ G+VTAGNA
Sbjct: 200 AQNTQLFAWEIVPVEVSTGRGRPSVVIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNA 259
Query: 533 STLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
S+++DG L + IA+I G+AD P F P
Sbjct: 260 SSISDGAAALVLVSGEKALELGLHVIAKIRGYADAAQAPELFTTTP 305
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 186 bits (452), Expect = 2e-47
Identities = 101/226 (44%), Positives = 137/226 (60%), Gaps = 3/226 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYL--K 175
A + AG+P S C T+NKVCA+GMKS+MLA+Q +Q G I++AGGMESMSNVP YL
Sbjct: 80 AALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLPDA 139
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + G +VDG++ DGL DVYN F MG C E A + +ITR++QD YA+ S++R A
Sbjct: 140 RRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQSFERGIA 199
Query: 356 AYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNA 532
A + F E+VPV V RG P V+ +DE + + K KL F+++ G+VTAGNA
Sbjct: 200 AQNTQLFAWEIVPVEVSTGRGRPSVVIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNA 259
Query: 533 STLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
S+++DG L + IA+I G+AD P F P
Sbjct: 260 SSISDGAAALVLVSGEKALELGLHVIAKIRGYADAAQAPELFTTTP 305
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 186 bits (452), Expect = 2e-47
Identities = 101/226 (44%), Positives = 137/226 (60%), Gaps = 3/226 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYL--K 175
A + AG+P S C T+NKVCA+GMKS+MLA+Q +Q G I++AGGMESMSNVP YL
Sbjct: 80 AALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLPDA 139
Query: 176 RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAA 355
R + G +VDG++ DGL DVYN F MG C E A + +ITR++QD YA+ S++R A
Sbjct: 140 RRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQSFERGIA 199
Query: 356 AYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNA 532
A + F E+VPV V RG P V+ +DE + + K KL F+++ G+VTAGNA
Sbjct: 200 AQNTQLFAWEIVPVEVSTGRGRPSVVIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNA 259
Query: 533 STLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
S+++DG L + IA+I G+AD P F P
Sbjct: 260 SSISDGAAALVLVSGEKALELGLHVIAKIRGYADAAQAPELFTTTP 305
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 185 bits (451), Expect = 2e-47
Identities = 101/227 (44%), Positives = 137/227 (60%), Gaps = 4/227 (1%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYL--- 172
A + AG+P S C T+NKVCA+GMKS+MLA+Q +Q G I++AGGMESMSNVP YL
Sbjct: 80 AALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLPDA 139
Query: 173 KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSA 352
R + G +VDG++ DGL DVYN F MG C E A + +ITR++QD YA+ S++R
Sbjct: 140 SRRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQDAYAIQSFERGI 199
Query: 353 AAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGN 529
AA + F E+VPV V RG P V+ +DE + + K KL F+++ G+VTAGN
Sbjct: 200 AAQNTQLFAWEIVPVEVSTGRGRPSVVIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGN 259
Query: 530 ASTLNDGXXXXXXXXXXXXKRLNVKPIARIVGFADGECDPIDFPIXP 670
AS+++DG L + IA+I G+AD P F P
Sbjct: 260 ASSISDGAAALVLVSGEKALELGLHVIAKIRGYADAAQAPELFTTTP 306
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 95.5 bits (227), Expect = 3e-20
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLKRG 181
A FAG P S TVN+ C+SG++++ A ++ G I + G+ESMS ++ G
Sbjct: 118 AAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMSTD--HIPGG 175
Query: 182 ETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAY 361
+ D F D MG +EN A++ +TR++QD AV S+KR+AAA
Sbjct: 176 GFHGSNPRAQD---FPKARDCL--LPMGITSENVAERFGVTREEQDMAAVESHKRAAAAI 230
Query: 362 EAKAFVDELVPV------PVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTA 523
+ DE++PV P + A V+ +D N KL TVF K+NG+ TA
Sbjct: 231 ASGKLKDEIIPVATKIVDPETKAEKAIVVSVDDGVRPNSNMADLAKLKTVF-KQNGSTTA 289
Query: 524 GNASTLNDG 550
GNAS ++DG
Sbjct: 290 GNASQISDG 298
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 95.5 bits (227), Expect = 3e-20
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLKRG 181
A FAG P S TVN+ C+SG++++ A ++ G I + G+ESMS ++ G
Sbjct: 75 AAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMSTD--HIPGG 132
Query: 182 ETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAY 361
+ D F D MG +EN A++ +TR++QD AV S+KR+AAA
Sbjct: 133 GFHGSNPRAQD---FPKARDCL--LPMGITSENVAERFGVTREEQDMAAVESHKRAAAAI 187
Query: 362 EAKAFVDELVPV------PVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTA 523
+ DE++PV P + A V+ +D N KL TVF K+NG+ TA
Sbjct: 188 ASGKLKDEIIPVATKIVDPETKAEKAIVVSVDDGVRPNSNMADLAKLKTVF-KQNGSTTA 246
Query: 524 GNASTLNDG 550
GNAS ++DG
Sbjct: 247 GNASQISDG 255
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 87.0 bits (206), Expect = 1e-17
Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLKRG 181
A +AG P++ TVN+ C+SG++++ A ++ G I + G+ESM+ P
Sbjct: 119 AAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPM----- 173
Query: 182 ETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAY 361
++ G V+ V MG +EN A++ ++RQ+QD+ AV+S++++AAA
Sbjct: 174 --AWEGS--VNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAAT 229
Query: 362 EAKAFVDELVPVP---VPQKRG--APVIFAEDEEYK-RVNFEKFTKLSTVFQKENGTVTA 523
A F DE++PV V K G P+ + D+ + KL VF+K+ GT TA
Sbjct: 230 AAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKD-GTTTA 288
Query: 524 GNASTLNDG 550
GN+S ++DG
Sbjct: 289 GNSSQVSDG 297
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 86.6 bits (205), Expect = 1e-17
Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Frame = +2
Query: 2 AVIFAGLPKSPXCPTVNKVCASGMKSIMLAAQGLQTGAQXIILAGGMESMSNVPFYLKRG 181
A +AG P++ TVN+ C+SG++++ A ++ G I + G+ESM+ P RG
Sbjct: 111 AAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNP----RG 166
Query: 182 ETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAY 361
+ G + F+ + MG +EN A + ++R++QD+ AV+S++++A+A
Sbjct: 167 ---WKGSVNPNVKKFEQAHNCL--LPMGITSENVAHRFNVSREEQDQAAVDSHRKAASAT 221
Query: 362 EAKAFVDELVPVP---VPQKRG--APVIFAEDEEYK-RVNFEKFTKLSTVFQKENGTVTA 523
+ F DE+ PV V K G P+ + D+ + KL VF KE+GT TA
Sbjct: 222 ASGKFKDEITPVKTKIVDPKTGDEKPITVSVDDGIRPNTTLSGLAKLKPVF-KEDGTTTA 280
Query: 524 GNASTLNDG 550
GN+S L+DG
Sbjct: 281 GNSSQLSDG 289
>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 707
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 128 LAGGMESMSNVPFYLKRGETSYGGMQLVD 214
+AGG+E + N LKRG ++GG VD
Sbjct: 44 VAGGLEKVGNNFVGLKRGRDTFGGSSEVD 72
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +1
Query: 490 GIPKGKWHC-YCRQCFNIK 543
G+PK +WHC C Q FN K
Sbjct: 83 GVPKSEWHCSRCVQAFNGK 101
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +1
Query: 490 GIPKGKWHC-YCRQCFNIK 543
G+PK +WHC C Q FN K
Sbjct: 344 GVPKSEWHCSRCVQAFNGK 362
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -2
Query: 231 PSNTIPSTNC-IPPYEVSP 178
PS+T PS+NC PPY+ SP
Sbjct: 49 PSHTPPSSNCGSPPYDPSP 67
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -2
Query: 231 PSNTIPSTNC-IPPYEVSP 178
PS+T PS+NC PPY+ SP
Sbjct: 49 PSHTPPSSNCGSPPYDPSP 67
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 377 VDELVPVPVPQKRGAPVIFAEDEEYKRVN-FEKFTKLSTVFQKENGTVTAGNASTLND 547
+DE++ + +PQ P I + + R+ FTK++T + V N S N+
Sbjct: 56 IDEILSIQIPQSEPKPAIAESLKIFLRIKPLRTFTKVTTTTKSRPRNVWPQNPSKKNN 113
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 484 VYGIPKGKWHC-YCRQCFNIK 543
+ G+PK +WHC C Q +N K
Sbjct: 357 IKGVPKSEWHCSRCVQLYNGK 377
>At1g22540.1 68414.m02815 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 557
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 645 SHSPSANPTIRAIG----LTFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 484
+H P ++ IG L+F + +A++ K A + + P TVP S W V
Sbjct: 389 THKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVP 448
Query: 483 NFVNF 469
+V F
Sbjct: 449 QYVLF 453
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,874,478
Number of Sequences: 28952
Number of extensions: 234305
Number of successful extensions: 738
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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