Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L23
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    33   0.037
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   1.4  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   4.2  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   7.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   7.3  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 426 PKEDAYRSMC--APILCCSCHPS-GNADHRSHTRCLGDLQR 313
           PK D +RS C  A   C  C+ +    D+R+HT C+ + QR
Sbjct: 14  PKLDQHRSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQR 54


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 342 HTRCLGDLQRCKVDGSLSSPLPKCTWGLSMPLN 244
           HT+ L +L+    D S+S P  + +WG+ +P N
Sbjct: 214 HTQVLEELKTGISDLSISRPKQRLSWGIPVPGN 246


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 110 RVQYRPTSLVGGPISPSCCHRYINNHQG 27
           RV YR  S +   IS   CH Y+N   G
Sbjct: 255 RVFYRVLSGMHSSISTHLCHGYLNQRNG 282


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 QSPIAISARQAIPISIPAIELI 194
           Q P AIS+  AIP++ PA  L+
Sbjct: 53  QEPAAISSTGAIPLNSPAAPLL 74


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  YLWQQDGDIGPPTRDVGRYCTLLVAAVSSLP*RFQHV 156
           YL+ ++  IGP TR  GR          S   RF+HV
Sbjct: 394 YLFYRNNQIGPRTRTEGRSSITEGKPFLSSSLRFEHV 430


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 439 MMCISKGRRISFNVCSDPLLFLSPQWK 359
           + C+S  RR   +   DP+L +   WK
Sbjct: 54  LSCLSGLRRFYLSTYEDPILLIPAPWK 80


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 442 WMMCISKGRRISFNVCSDPLLFLSPQWKCRPSISYSLSR 326
           ++ C++   +I   VC + L++ S   K   S+   LSR
Sbjct: 558 YVKCLNCSNKIIHTVCHNSLIYFSSGLKMSKSVISCLSR 596


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 312  IFGGPLDNEYEIDG-LHFHWGDK 377
            +F G LD E +IDG   + W DK
Sbjct: 1138 VFAGGLDRENDIDGAFAYCWKDK 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,585
Number of Sequences: 5004
Number of extensions: 52942
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)