Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L23
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   4e-16
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)               81   8e-16
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)        63   1e-10
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)         61   5e-10
SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)        40   0.001
SB_34778| Best HMM Match : Ank (HMM E-Value=0)                         32   0.36 
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              28   4.4  
SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   5.8  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         27   7.6  
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   7.6  

>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
 Frame = +3

Query: 18  AVFTLVVINVSVAAGWGYRASDQRRWAVLHPACGGRQQSPI-AISARQAIPISIPAIELI 194
           A+  L ++  S+AA W Y +    +W+     C G  QSPI  I++  A   S+  ++ +
Sbjct: 415 ALVVLSLLGASLAADWDYDSKGPSKWSSSFSQCNGSSQSPIDIITSSVAFDQSLGELQFV 474

Query: 195 GYQN-PLPGPLTITNTGHSVALTIPKYTSEEEKKGFRLPYIFGGPLDNEYEIDGLHFHWG 371
            +   P    +++ N GH+  + +    +           + GG L   Y     H HWG
Sbjct: 475 NFDTIPTGSKISLKNNGHAFQVNMLSAGTFT---------VSGGGLGATYSTVQFHLHWG 525

Query: 372 DKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAXFYQV 524
            KN +GSEH ++       +HI+  N KY N + A+   DGL V+    +V
Sbjct: 526 SKNEQGSEHLIDGKAFAGAIHIVSYNTKYPNISAAVDKSDGLAVVGILLKV 576


>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
          Length = 291

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
 Frame = +3

Query: 63  WGY-RASDQRRWAVLHPACGGRQQSPIAISARQA-IPISIPAIELIGYQNPLPGPLTITN 236
           W Y  A+    W    P CGG++QSPI I+  +A    S+  ++ I Y N     L + +
Sbjct: 33  WSYDEATGPSTWPNHFPHCGGKKQSPININTEEAKYDGSLTDLD-IRYPNTTD-VLLVNH 90

Query: 237 TGHSVALTIPKYTSEEEKKGFRLPYIF-GGPLDNEYEIDGLHFHWGDKNNRGSEHTLNDM 413
            GH++   I   +SE        P++  G  L + Y +   HFH G  + +GSEH ++ +
Sbjct: 91  HGHAIEADI--LSSE--------PFVATGADLSSRYRLAQFHFHVGSSDIQGSEHHIHGV 140

Query: 414 RLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAXFYQ 521
           + PLEMH++H N KY N + A    DGL V++  ++
Sbjct: 141 KYPLEMHLVHYNDKYPNASSAQGLLDGLAVISVLFE 176


>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +3

Query: 312 IFGGPLDNEYEIDGLHFHWGDKNNRGSEHTLNDMRLPLEMHIIHRNKK-YRNTAEAM--Q 482
           I  GPL ++Y+    HFHWG     GSEH ++    P EMHI+H N   Y++ A AM   
Sbjct: 2   ITSGPLSHKYKFAQFHFHWGKDEKEGSEHRVDGKMYPSEMHIVHYNSDLYKDAASAMSSD 61

Query: 483 HPDGLCVLAXFYQ 521
           + DGLCVL  F +
Sbjct: 62  NKDGLCVLGVFLE 74


>SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)
          Length = 252

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 5/153 (3%)
 Frame = +3

Query: 63  WGYRASDQ---RRWAVLHPACGGRQQSPIAISARQAI-PISIPAIELIGYQN-PLPGPLT 227
           W Y  S       WA  +PAC G  QSPI I     +   S+  ++   +   P    + 
Sbjct: 104 WNYNFSGPIGPDHWANRYPACNGSSQSPINIVTSSVMYDSSLGKLQFNNFDRIPSGAKIM 163

Query: 228 ITNTGHSVALTIPKYTSEEEKKGFRLPYIFGGPLDNEYEIDGLHFHWGDKNNRGSEHTLN 407
           + N GH  A  +   T         L Y+ GG L   +     H H G+ + RG+EH ++
Sbjct: 164 VRNNGH--AFQVNFMTPN-------LFYVHGGGLGANFTTAQFHMHLGEDDTRGAEHLID 214

Query: 408 DMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVL 506
             R    +HI++ N KY + + A    DGL V+
Sbjct: 215 GQRNAACIHIVNYNTKYPDISTAANKSDGLAVI 247


>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
          Length = 338

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
 Frame = +3

Query: 93  WAVLHPACGGRQQSPIAISARQAIPISIPAIEL-IGYQNPLPG-PLTITNTGHSVALTIP 266
           WA  +P C G  QSPI I   +   +S P   + I + N   G    ++N G ++   + 
Sbjct: 24  WASAYPECKGLAQSPINIVTSKVTRVSRPFRYMKINFNNYNGGLACFLSNDGKTLDFKV- 82

Query: 267 KYTSEEEKKGFRLPYIFGGPLD--NEYEIDGLHFHWGDKNNRGSEHTLNDMRLPLEMHII 440
                  ++G    +I     D  + Y+++ + FH+G  +  GSEH ++  R P E+ +I
Sbjct: 83  -------RQGLGQAFIDNPVEDPHDRYQLETVRFHFGCNDWLGSEHAVDGRRHPGEIQMI 135

Query: 441 HRNKKYRNTAEAMQHPDGLCVLAXF 515
             N KY N ++A    DGL V+A F
Sbjct: 136 FHNTKYSNVSDAADKSDGLLVVAAF 160


>SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)
          Length = 134

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
 Frame = +3

Query: 90  RWAVLHPACGGRQQSPIAISARQAIPISIPAIELIGYQNPLPGPLTITNTGHSVALTIPK 269
           RW   +       QSPI I  +     S     L     P+    T+TN G ++ LT   
Sbjct: 20  RWHKCYIGAEPGHQSPIDIVTKDVTQDSSLG-SLWNTYEPVANS-TLTNDGRTLQLTFAN 77

Query: 270 YTSEEEKKGFRLPYIFGGPLDNEYEIDGLHFHW-GDKNNRGSEHTLNDMRLPLEMHIIH 443
             +           + GGPL +EY++  + FHW   + + GSEH ++     +E++ +H
Sbjct: 78  NNN----------VLSGGPLTDEYQLAMIKFHWAATEESAGSEHMIDSQGHAIEVNALH 126


>SB_34778| Best HMM Match : Ank (HMM E-Value=0)
          Length = 592

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 36  VINVSVAAGWGYRASDQRRWAVLHPACGGRQQSPIAISARQAIPISI 176
           V+   +  G  ++A D R W+ LH AC G   + I +   + + I++
Sbjct: 99  VLEFLLNEGGNFQAEDSRGWSALHHACKGGHSNIIEVLFHKGLDINV 145


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 152 C*NRYGRLLTAATSRVQYRPTSLVGGPISP 63
           C +   R L  ++ R + RP S+ GGP+SP
Sbjct: 745 CEDDTSRTLLESSKRKEERPHSICGGPLSP 774


>SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 DH*YGTFSGIDNPQVHFGRGEERLPS 304
           DH     +G DN QVH  RG+  LPS
Sbjct: 199 DHVSNLDNGRDNDQVHSRRGDNSLPS 224


>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 440

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 195 GYQNPLPGPLTITNTGHSVALTIPKYTSEEE 287
           G Q+PL G   I     SVA+ IPK T   E
Sbjct: 193 GRQSPLHGDHAIQKATQSVAIPIPKITRSSE 223


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 324 PLDNEYEIDGLHFHWGDKNNRGSEHTLNDMRLPLEM 431
           P   +Y+I+ L + WG   ++ + H L D+ +  E+
Sbjct: 454 PKGQQYDINALEYTWGTDTSKLTRHGLYDLVVAAEV 489


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 366 WGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPD 491
           +GD ++   E    D   P +  ++H +KKY  TAE +  PD
Sbjct: 37  YGDADDDEEEQMDQDDE-PRQQIVLHEDKKYYPTAEEVYGPD 77


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 310  TSLEVP*TTSMRSMVCISTGVTRTTEDRSTH*TICVFLWKCTSSIGIRNTETPRKLCSTL 489
            T+ EV   T + +   +ST V   T   STH T        T ++    TET   +  T 
Sbjct: 1785 TATEVTTATQVTTETAVSTAVQTLT---STHVTTATNTRNATLTLTHHKTETSTAVAMTT 1841

Query: 490  MAYVCSRXSIRLWNS 534
            + +  +  ++ L NS
Sbjct: 1842 VPHTVTTTAVALVNS 1856


>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1184

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 261  IPKYTSEEEKKGFRLPYIFGGPLDNEYEI 347
            +  YT  EE+ G+R+PY+  G   N  ++
Sbjct: 943  VTSYTELEEEPGYRIPYVPPGDWPNSGQV 971


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,587
Number of Sequences: 59808
Number of extensions: 434899
Number of successful extensions: 1073
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)