Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L22
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0) 192 2e-49
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.096
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08) 32 0.39
SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047) 31 1.2
SB_35714| Best HMM Match : Vicilin_N (HMM E-Value=5) 29 2.7
SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92) 29 3.6
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06) 29 4.8
SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33) 29 4.8
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
Length = 225
Score = 192 bits (469), Expect = 2e-49
Identities = 84/141 (59%), Positives = 110/141 (78%)
Frame = +1
Query: 271 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNV 450
MD+SHV LVS+ L ADGFD YRCDR +S+GM +SKI+KCAG++D +TI A+D D V
Sbjct: 1 MDSSHVCLVSVQLNADGFDPYRCDRTLSIGMKTSLLSKIIKCAGNEDRITIHAEDTGDTV 60
Query: 451 TFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFAXICRDLSQFGESMV 630
TF FESPN+EK S+Y+MKLM++D EHLGIP+ Y I+MPS+EF ICRDLSQ G+S+
Sbjct: 61 TFSFESPNEEKTSEYKMKLMDIDSEHLGIPDQTYDAVIKMPSAEFQRICRDLSQMGDSVQ 120
Query: 631 ISCTKEGVKFSATGDIGSXNV 693
I+CTK+G+ F+ +G+ GS V
Sbjct: 121 IACTKDGIDFTVSGESGSGKV 141
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 34.3 bits (75), Expect = 0.096
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Frame = +1
Query: 133 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 312
+IH NIN + +L +L K L + LT+ D QL A++ H+
Sbjct: 220 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 278
Query: 313 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 486
G Y + S + L K+L + + I A N +NV FV + SPN
Sbjct: 279 GGGLMAYFSSKMASRKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 331
Query: 487 SDYEMKL 507
+DY KL
Sbjct: 332 TDYYRKL 338
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 34.3 bits (75), Expect = 0.096
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Frame = +1
Query: 133 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 312
+IH NIN + +L +L K L + LT+ D QL A++ H+
Sbjct: 868 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 926
Query: 313 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 486
G Y + S + L K+L + + I A N +NV FV + SPN
Sbjct: 927 GGGLMAYFSSKMASCKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 979
Query: 487 SDYEMKL 507
+DY KL
Sbjct: 980 TDYYRKL 986
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 32.3 bits (70), Expect = 0.39
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Frame = +1
Query: 133 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 312
+IH NIN + +L +L K L + LT+ D QL A++ H+
Sbjct: 1125 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 1183
Query: 313 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 486
G Y + S + L K L + + I A N +NV FV + SPN
Sbjct: 1184 GGGLMAYFSSKMASRKVKLPKQYKWL------EVLAINAIINNNNVLFVGIYRSPNPTG- 1236
Query: 487 SDYEMKL 507
+DY KL
Sbjct: 1237 TDYYRKL 1243
>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
Length = 438
Score = 32.3 bits (70), Expect = 0.39
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Frame = +1
Query: 133 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 312
+IH NIN + +L +L K L + LT+ D QL A++ H+
Sbjct: 220 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNDQL-ALEGYHIYRKDRKKG 278
Query: 313 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 486
G Y + S + L ++L + + I A N +NV FV + SPN
Sbjct: 279 GGGLMAYFSSKMASRKVKLPKQYRLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 331
Query: 487 SDYEMKL 507
+DY KL
Sbjct: 332 TDYYRKL 338
>SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)
Length = 305
Score = 30.7 bits (66), Expect = 1.2
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Frame = +1
Query: 133 VIH*NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLR 312
+IH NIN + +L +L K L + LT+ D QL A++ H+
Sbjct: 94 LIHLNINSCQNKLDELLLLNKELRSHVIFLTETKIDSSYTNAQL-ALEGYHIYRKDRKKG 152
Query: 313 ADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFV--FESPNQEKV 486
G + S + L K+L + + I A N +NV FV + SPN
Sbjct: 153 GGGLMANFSSKMASRKVKLPKQYKLL------EVLAINAIINNNNVLFVGIYRSPNPTG- 205
Query: 487 SDYEMKL 507
+DY KL
Sbjct: 206 TDYYCKL 212
>SB_35714| Best HMM Match : Vicilin_N (HMM E-Value=5)
Length = 288
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/41 (21%), Positives = 25/41 (60%)
Frame = -1
Query: 665 AENFTPSFVHEITIDSPNCERSRQIXANSELGMRIVQLYSV 543
+ N+T + ++ I+ E + ++ +NS LG+++ +++ V
Sbjct: 46 SSNYTQTLIYSISTSYTGAEGTTELGSNSNLGLKVTKIHRV 86
>SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)
Length = 655
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 127 IEVIH*NINMFEARLLRSSILKKVLEAIKDLLTQA-TFDCDDNGIQLQAMDNSHVSLVSL 303
++VI N + + L L+ +LEA+K+LL Q+ +F C+++ ++L ++ H+S SL
Sbjct: 14 LQVIQAITNYLDKKELEVDKLQAILEAVKNLLNQSLSFLCEES-LRL-PINKDHLSFSSL 71
>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
Length = 368
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 251 LSSQSKVACVSRSLIASSTFFKIELRSKRASNMFIF*CITSIIL 120
+S +VA + S FK+ L SK++S+ + C T I+L
Sbjct: 38 MSVAERVAAERAEKLGDSVGFKVRLESKQSSSTRLLYCTTGILL 81
>SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)
Length = 535
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 478 EKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEF 585
E + + EMKL LDLE++ IPE+ + P+ +F
Sbjct: 496 ETLLNMEMKLRLLDLENISIPESPPAIPPEPPNYDF 531
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 316 DGFDKYRCD---RNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKV 486
D F +Y C +N + + S+I + + + + + + A +N + +SPN +KV
Sbjct: 158 DNFYEYACGSWVKNNDVPPSHLQYSRISELSNNNEKILMHALNNTEPN----DSPNIKKV 213
Query: 487 SDYEMKLMNLD-LEHLG 534
+ MN+D ++HLG
Sbjct: 214 KTFFQSCMNVDAIDHLG 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,156
Number of Sequences: 59808
Number of extensions: 382048
Number of successful extensions: 961
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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