Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L22
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   157   9e-39
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    36   0.037
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    29   2.4  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    28   5.5  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  157 bits (380), Expect = 9e-39
 Identities = 70/144 (48%), Positives = 100/144 (69%), Gaps = 1/144 (0%)
 Frame = +1

Query: 256 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQD 435
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 436 N-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFAXICRDLSQ 612
           N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+    MP+ EF   C+DLS 
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEMPAGEFQKTCKDLST 120

Query: 613 FGESMVISCTKEGVKFSATGDIGS 684
           F +S+ I+ TK G+ F+  GDIGS
Sbjct: 121 FSDSLNITATKAGIVFTGKGDIGS 144


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +1

Query: 289 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 468
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D   N+T+V   
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 469 PNQE----KVSDYEMKLMN-LDLEHLGIPETEYSCT 561
             +     KV D  M L +  D+E  G  E   +C+
Sbjct: 63  GTERKIRGKVGDNVMFLAHRYDIEMEGACEASLACS 98


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 498 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 406
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/88 (25%), Positives = 33/88 (37%)
 Frame = +1

Query: 298 SLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ 477
           SL +  DG   + C  N +    +    K  +  GD+    IK       VT   ++P Q
Sbjct: 12  SLIIAPDGSVLFECICNANPQPTVKWFLKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQ 71

Query: 478 EKVSDYEMKLMNLDLEHLGIPETEYSCT 561
           E    Y++   N    H    +  Y CT
Sbjct: 72  EDQGVYKVTATNTHGSHSVEQQYIYKCT 99


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 585 CXNLSGSLTVWRINGDFMHKRRSKVL 662
           C N SG +TVW++N   +  ++  VL
Sbjct: 556 CGNTSGCITVWKVNNKPLSMKKLSVL 581


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 585 CXNLSGSLTVWRINGDFMHKRRSKVL 662
           C N SG +TVW++N   +  ++  VL
Sbjct: 556 CGNTSGCITVWKVNNKPLSMKKLSVL 581


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,064
Number of Sequences: 27780
Number of extensions: 293433
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)