Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L22
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P...   262   2e-70
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P...   262   2e-70
At2g36960.2 68415.m04533 myb family transcription factor contain...    31   0.96 
At2g36960.1 68415.m04532 myb family transcription factor contain...    31   0.96 
At1g22160.1 68414.m02770 senescence-associated protein-related s...    30   1.3  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    27   9.0  

>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
           (PCNA2) identical to SP|Q9ZW35 Proliferating cell
           nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 264

 Score =  262 bits (642), Expect = 2e-70
 Identities = 116/180 (64%), Positives = 148/180 (82%)
 Frame = +1

Query: 154 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 333
           M E RL++ S+LKKVLEA+KDL+  A FDC   G  LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 334 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 513
           RCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D +D VTF+FESP Q+K++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 120

Query: 514 LDLEHLGIPETEYSCTIRMPSSEFAXICRDLSQFGESMVISCTKEGVKFSATGDIGSXNV 693
           +D EHLGIP+ EY   +RMPS EF+ IC+DLS  G+++VIS TKEGVKFS  GDIG+ N+
Sbjct: 121 IDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANI 180


>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
           (PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
           nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 263

 Score =  262 bits (641), Expect = 2e-70
 Identities = 116/180 (64%), Positives = 148/180 (82%)
 Frame = +1

Query: 154 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 333
           M E RL++ S+LKKVLE+IKDL+  A FDC   G  LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 334 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 513
           RCDRN+SMGMNLG+MSK+LKCAG+ D +TIKA D  D VTF+FESP Q+K++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMD 120

Query: 514 LDLEHLGIPETEYSCTIRMPSSEFAXICRDLSQFGESMVISCTKEGVKFSATGDIGSXNV 693
           +D EHLGIP+ EY   +RMPS+EF+ IC+DLS  G+++VIS TKEGVKFS  GDIG+ N+
Sbjct: 121 IDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANI 180


>At2g36960.2 68415.m04533 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 741

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 327
           +I DLL++   D D +G+   A + SH  L  +   +D FD
Sbjct: 529 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 569


>At2g36960.1 68415.m04532 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 743

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 327
           +I DLL++   D D +G+   A + SH  L  +   +D FD
Sbjct: 531 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 571


>At1g22160.1 68414.m02770 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 147

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +1

Query: 400 GDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSS 579
           G +    IK   +   + F    P++++ SD++++L+N+D EH  + +      +    S
Sbjct: 4   GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVD-EHRQVHQRLLDQRLLAMVS 62

Query: 580 EFAXICRDLSQFGESMVISCT 642
                 R  S + E  + SC+
Sbjct: 63  PRGTQRRHSSDYSEDFLRSCS 83


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -3

Query: 633 NHH*FSKL*EIPTDXSKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKNK 454
           +H  FSKL  +P    KF +    +A    L  +   + ++H L  VI D LL  A+   
Sbjct: 355 DHPIFSKLLPVPFSSGKFFSADHLTAIGNCLKESTFCQPRVHSLWPVIVDMLLPEAVVQS 414

Query: 453 CDIVSI 436
            D+VS+
Sbjct: 415 EDVVSV 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,476,151
Number of Sequences: 28952
Number of extensions: 261887
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)