Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.5  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   3.4  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   4.4  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   4.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 404 QPPGHGEDGDCNMPHEPXQPRQVFGHVLNSSGQDV 508
           +PP   EDG   M  +P +  ++   V++S+  DV
Sbjct: 235 EPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDV 269


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 92 VLYQEKKRLYDFFETPAHNNVTTS 21
          VLY E K  +D+   P+ +++TTS
Sbjct: 13 VLYPEAKEFFDYPTIPSDSSITTS 36


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 504 SCPLELSTCPKTCRGW 457
           +CPLEL+TC  T + W
Sbjct: 169 TCPLELTTCAITFKFW 184


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 526 FSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 413
           + + +SDI S   KH+  D+S + W    + +   +++
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIA 471


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 219 KKFITTQLAPVWRDFRGLVKVKMVPY 296
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,383
Number of Sequences: 5004
Number of extensions: 47612
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)