Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L21
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    69   3e-12
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    60   2e-09
03_02_0673 - 10328994-10329281                                         43   2e-04
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814...    34   0.091
05_01_0258 + 1984666-1984878,1985019-1985852                           31   0.48 
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637...    29   3.4  
06_02_0089 + 11595704-11596027                                         28   6.0  
08_02_0360 + 16196712-16197560,16198126-16198875                       27   7.9  
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425...    27   7.9  
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997...    27   7.9  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = +3

Query: 108 LRLVCFLMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVK 284
           L L   L+L    V  KK    KV +A+YYESLCP S  F+   LA V+RD     V + 
Sbjct: 11  LLLAAILLLAAGAVEGKK--GGKVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLS 68

Query: 285 MVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVL 395
           +VPYG +     DGK S    HG++EC+ N V+AC +
Sbjct: 69  LVPYGNAR--VKDGKISCQVEHGSEECFLNTVEACAI 103


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +3

Query: 183 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKMVPYGKSTHDKVDGKWSFICHHGAD 359
           ++VYYE+LCP    F+   LA ++RD    +V +++VP+G   + +V    S  C HG +
Sbjct: 1   MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57

Query: 360 ECYGNKVQACVLK 398
           EC  N ++ACV++
Sbjct: 58  ECQLNAIEACVIR 70


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +3

Query: 174 KVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKMVPYGKS 305
           KV +A+YYE+LCP   +FI   LA ++ D     V +++VPYG +
Sbjct: 38  KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNA 82


>10_08_0372 +
           17280560-17280811,17280901-17281065,17281305-17281410,
           17281432-17281487,17281607-17282201,17282863-17282975,
           17283106-17283326,17284113-17284437
          Length = 610

 Score = 33.9 bits (74), Expect = 0.091
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
 Frame = +3

Query: 192 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKMVPYGKSTHDKVDGKWSFIC- 344
           +YE  CP  ++ +   + P         W   R +V    +P+    H+K D  W     
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175

Query: 345 -----HHGADECYGNKVQACVLKDRNLQDTEKMEIVI 440
                HHGAD+   N       KD N+ +   +  V+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212


>05_01_0258 + 1984666-1984878,1985019-1985852
          Length = 348

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 108 LRLVCFLMLLCYVVAKKKT-EDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 269
           ++LVCF++++    A      D ++K+  YYE  C D +K + + +    +D RG
Sbjct: 2   VKLVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55


>03_02_0203 +
           6370729-6370850,6371213-6371391,6371516-6371625,
           6372721-6373575
          Length = 421

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 198 RNRPLF*PYGLRFSSSPRHSRAASESKPAGEXSSCCFIS 82
           R+ PL+ P   R S+S RHS A   + PA   S   +IS
Sbjct: 29  RSAPLYRPLDSRSSTSRRHSDANRGNSPAAPHSLDIYIS 67


>06_02_0089 + 11595704-11596027
          Length = 107

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +2

Query: 89  KQQDEXSPAGLLSDAALLCRGEEENRRP*GQNSGLLRIPLS*QQEVYNDATGSRLEGLQR 268
           KQQ +    G          G+   RR  G ++   R+P   QQ+      G+   G +R
Sbjct: 7   KQQQQQQQGGRRQHPGATRDGDRRQRR--GSSA---RMPRKQQQQQQGWGRGAAGSGTER 61

Query: 269 TCQSQNGPVWEEHARQGGW 325
           + Q+  G   EE  R+G W
Sbjct: 62  SAQAARG-AREEEERKGRW 79


>08_02_0360 + 16196712-16197560,16198126-16198875
          Length = 532

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 270 VL*SPSRREPVASL*TSCCQDKGIRNRPLF*PYGLRFSSSPRH 142
           VL SP   EP+  L  S   + G+R  P   P  +  S SPRH
Sbjct: 288 VLGSPENLEPIGELPGSAKPEPGVRPNPSR-PRSVARSLSPRH 329


>05_04_0288 +
           19839597-19839821,19841882-19842107,19842494-19842582,
           19845184-19845387,19845463-19845717,19845796-19846011,
           19846611-19846766,19846880-19847039,19847702-19847788,
           19847789-19847940,19848006-19848143,19848714-19848788,
           19849166-19849444
          Length = 753

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 171 GLRFSSSPRHSRAASESKPAGEXSSCCFISGKKT 70
           G  F + P  +R  S  KP G+ S+   ISG  T
Sbjct: 675 GATFGTKPSPARPPSARKPLGQSSNANIISGTPT 708


>03_02_0631 +
           9969841-9969868,9969965-9970082,9970186-9970828,
           9971146-9971935,9972002-9972051,9972618-9972704
          Length = 571

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 414 DTEKMEIVICLMNXTSPDKSLDTCLTQVD-KMSESD 518
           +T+  E+V   +   S DK LD+  TQVD + SE D
Sbjct: 307 ETDGFEVVDTPLTTDSDDKRLDSTTTQVDERCSECD 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,338
Number of Sequences: 37544
Number of extensions: 354946
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)