Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L21
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  72   4e-13
SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   1e-12
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 31   0.87 
SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)                      29   2.0  
SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   6.1  
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)                28   6.1  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.1  
SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
 Frame = +3

Query: 153 KKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKW 332
           K+  +  KVK+AVYY S  P+ ++F+  QL P       ++ + MVP+G     K    +
Sbjct: 20  KQTKKAEKVKLAVYYNSKNPEFRRFMVAQLYPTSNKIPNILDISMVPFGDGKEIKAKSGF 79

Query: 333 SFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNXT-SPDKSLDTCLTQVDKMS 509
            + C +GA+EC  N +QAC +   N  +      V CL     S DK    C  Q+    
Sbjct: 80  QYYCTNGAEECLENLIQACAVATENNPEI-LTSFVGCLSYYDGSVDKIAKYCSNQI---K 135

Query: 510 ESDKLKRCASXEQG 551
           + +K++ C    QG
Sbjct: 136 DYEKVEYCLKNTQG 149


>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
 Frame = +3

Query: 177 VKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKWSFICHHGA 356
           V I++YYES+C   +  I  QL P ++    ++ + +VPYG +   +   KW F C HG 
Sbjct: 27  VAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQ 86

Query: 357 DECYGNKVQACVLKD-RNLQDTEKMEIVIC---LMNXTSPDKSLDTCLTQVDKMSESDKL 524
            EC GN ++ C +   +N+  +     + C    ++  +P  +   C  Q+    +   +
Sbjct: 87  GECEGNIIEVCAINVLKNI--SAYFPFIHCFEQFISSYNPSSTAQYCAKQLG--IDYAPI 142

Query: 525 KRCASXEQGDNL 560
           ++CAS  QG+ L
Sbjct: 143 EKCASGLQGNEL 154


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 364 HSSAPWWQMNDHFPSTLS 311
           HS+  +W  NDHFPS+LS
Sbjct: 585 HSNHRYWYYNDHFPSSLS 602


>SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)
          Length = 471

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 317 LVVRALPIRDHFDFDKSSEVPPDGSQLRRYKLLAVRTKGF 198
           + ++A+  R HFDF     + PD S +R+  L  +R  G+
Sbjct: 209 IAIKAMKWRSHFDFLSDKSIVPD-SFMRKILLKGIRRHGY 247


>SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 50  FQKNHIIVFFPDIKQQDEXSPAGLLSDAALLCRGEEENRRP 172
           F++  + VFF D+  + E      +++  LL  G E +RRP
Sbjct: 10  FRRRSVTVFFDDLLSESERQSGDNITNNELLPVGYERDRRP 50


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 312  DKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVI-CLMNXTSPD---KSLD 479
            ++ D KW     HG DE     +Q C L +R + +  + EI +  ++    P+    SLD
Sbjct: 4004 EEQDNKWELFIKHGTDE-NPLHIQLCFLINRLIGNHVEKEIYLQAMLACRVPEDILPSLD 4062

Query: 480  TCLTQVDKMSESDK 521
             C    D +S SDK
Sbjct: 4063 RCGVAQDLLS-SDK 4075


>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 334 DHFPSTLSCVLFPYGTILTLTSPL 263
           D FP   SC  FPY  ++++ SP+
Sbjct: 96  DVFPIACSCRCFPYHVLMSMCSPI 119


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 195  YESLCPDSKKFITTQLAPVWRDFRGLVKVKMVP 293
            +  + PD+ + I  +L P++ D+  ++KVK+ P
Sbjct: 3409 FRVIAPDTIRDINDELVPLFDDYHKVMKVKLSP 3441


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 334 DHFPSTLSCVLFPYGTILTLTSPL 263
           D FP   SC  FPY  ++++ SP+
Sbjct: 246 DVFPIACSCRCFPYHVLMSMCSPI 269


>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
          Length = 533

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 334 DHFPSTLSCVLFPYGTILTLTSPL 263
           D FP   SC  FPY  ++++ SP+
Sbjct: 54  DVFPIACSCRCFPYHVLMSMCSPI 77


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 113 AGLLSDAALLCRGEEENRRP*GQNSGLLRIPLS*QQEV 226
           AG +SD  LLC G +  +R    + G+L+ P   + EV
Sbjct: 289 AGQVSDQNLLCHGHDMLQRDVPNSEGILQKPSQREDEV 326


>SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +3

Query: 204 LCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKWSFICH 347
           LCPD       Q  P W+  R  + ++++P   S H        ++ H
Sbjct: 351 LCPDILLLALLQTNPTWQLLRNELILELIPVFLSNHPNAASVLHYVWH 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,748,099
Number of Sequences: 59808
Number of extensions: 407821
Number of successful extensions: 1109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)