Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L21
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 240 LAPVWRDFRGLVKVKMVPYGKSTHDKV 320
           L  VW D++G+V  +++P  ++ +  V
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVV 215


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 156 SSPRHSRAASESKPAGEXSSCCF 88
           SSP+HS +++ + PA   +S  +
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMY 89


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 318 VDGKWSFICHHG 353
           +DG   F+CH+G
Sbjct: 800 IDGNVVFVCHNG 811


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 85  IRKKNDYMIFLKLPRTITSR 26
           +++  +YM + KLPR +  R
Sbjct: 392 VKQVEEYMAYRKLPREMRQR 411


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 85  IRKKNDYMIFLKLPRTITSR 26
           +++  +YM + KLPR +  R
Sbjct: 360 VKQVEEYMAYRKLPREMRQR 379


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 159 KTEDHKVKIAVYYESLCPDSKKFITT 236
           K E+H   + V  E    +SKK+ T+
Sbjct: 177 KIEEHDTVLVVNIEKSGKESKKYATS 202


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 159 KTEDHKVKIAVYYESLCPDSKKFITT 236
           K E+H   + V  E    +SKK+ T+
Sbjct: 188 KIEEHDTVLVVNIEKSGKESKKYATS 213


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 159 KTEDHKVKIAVYYESLCPDSKKFITT 236
           K E+H   + V  E    +SKK+ T+
Sbjct: 177 KIEEHDTVLVVNIEKSGKESKKYATS 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,040
Number of Sequences: 438
Number of extensions: 3144
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)