BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_F_L19 (568 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 157 6e-39 SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8) 30 1.1 SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4) 29 2.0 SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) 29 2.0 SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 29 3.5 SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6 SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 28 6.1 SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06) 27 8.1 >SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) Length = 543 Score = 157 bits (381), Expect = 6e-39 Identities = 81/114 (71%), Positives = 86/114 (75%), Gaps = 1/114 (0%) Frame = +1 Query: 103 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 279 LG +H+ GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246 Query: 280 LAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 441 LAAQDVA +CK +GITALHIKLRA AQ MKIGRI Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300 >SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8) Length = 178 Score = 30.3 bits (65), Expect = 1.1 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +1 Query: 70 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 246 NK+ K +TLG + ET AH A + HVTD RE ++ + KV A Sbjct: 65 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHARVQHVTDPGIDREVRSKASAPAKVHA 124 Query: 247 DRDEASPYAAMLAAQDV 297 + +P M AA V Sbjct: 125 EGAAPAPSPRMHAAHSV 141 >SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4) Length = 433 Score = 29.5 bits (63), Expect = 2.0 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +1 Query: 70 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 246 NK+ K +TLG + ET AH A N HVT+ GRE ++ KV A Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388 Query: 247 DRDEASPYAAM 279 + +P + M Sbjct: 389 EGAAPAPSSRM 399 >SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) Length = 352 Score = 29.5 bits (63), Expect = 2.0 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +1 Query: 70 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 246 NK+ K +TLG + ET AH A + HVTD RE ++ + KV A Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298 Query: 247 DRDEASPYAAMLAAQDV 297 + +P M AA + Sbjct: 299 EGAAPAPSPRMHAAHSM 315 >SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) Length = 230 Score = 28.7 bits (61), Expect = 3.5 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +1 Query: 142 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 255 + +I +FND + DLSG+ETI ++ K++ +RD Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189 >SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 947 Score = 28.7 bits (61), Expect = 3.5 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +1 Query: 70 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 246 NK+ K +TLG + ET AH A + HVTD RE ++ KV A Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408 Query: 247 DRDEASPYAAMLAAQDV 297 + +P + M AA + Sbjct: 409 EGAAPAPSSRMHAAHSM 425 >SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2209 Score = 28.3 bits (60), Expect = 4.6 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = +1 Query: 70 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 249 NK+ K +TLG + ET AH A + HVTD ++ + KV A+ Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427 Query: 250 RDEASPYAAMLAAQ 291 A+P A ++ + Sbjct: 428 GAAAAPAAHSMSGE 441 >SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) Length = 889 Score = 27.9 bits (59), Expect = 6.1 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Frame = -3 Query: 344 SFMCKAVMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTRA--IVSRPDKSVT*TNV 171 S + +V P L SA SCA ++S A T PP T + +P K V Sbjct: 373 SSISTSVAPTSLFGSAKSCAPETKTTTSSNSLLAGTQQPPTTTTAPVFGQPGKPVASLGT 432 Query: 170 SL-NEAKMCATPNTVSPTKCWGPRVTWTSS 84 L +A+ T T T+ V+ SS Sbjct: 433 GLFGQAETAETSTTAVSTQSISQAVSAPSS 462 >SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06) Length = 141 Score = 27.5 bits (58), Expect = 8.1 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +1 Query: 202 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 339 R AR+ V A DEA+ + QD+ KCK LG+T + I Sbjct: 63 RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,859,719 Number of Sequences: 59808 Number of extensions: 388269 Number of successful extensions: 871 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 819 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 871 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1337207630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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