Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L17
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    31   0.19 
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    28   1.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   3.1  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   4.1  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   7.1  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   7.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.4  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 278 SSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANRLTEVANWTVLMIEAG 439
           +  EI + LY A A+   +  YD  ++GGG  G V A R  ++   T+ + + G
Sbjct: 27  AQIEISKRLYSAKAS--GNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRG 78


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 326 PADSSYDFIIVGGGSAGCVLANRLTEVANWTVLMIEA 436
           P    +D++++GGGS G   A R  +     V +IEA
Sbjct: 3   PISKVFDYLVIGGGSGGLASARRAAK-HGAKVALIEA 38


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 332 DSSYDFIIVGGGSAGCVLANRLTEVANWTVLMIEAGD 442
           D  YD I++G G   CVL+  L  V    VL I+  D
Sbjct: 2   DEEYDVIVLGTGLTECVLSG-LLSVDGKKVLHIDRND 37


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 623 VRGNRADYDNWAENGNEGWD----WNTVIQYFKKSERLD 727
           V GN AD  +W  +G   WD    +  V+ + KK + LD
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKSLD 148


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 452 SIANSPGYSLITSTLLPNWGYFG 520
           SIANSP  SL+T  L P +   G
Sbjct: 390 SIANSPSVSLLTKVLHPKYHLIG 412


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 316 RQRASRFELRLHNRGRRISWLRT 384
           ++RA + ELR+H   +RIS +R+
Sbjct: 215 KERAEKIELRVHESLKRISCIRS 237


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 392 RLTEVANWTVLMIEAGDDPPSIANSPGYSLITSTL 496
           +L E+ N+   ++E  DDPP I  +P +   TSTL
Sbjct: 794 KLEEIENY---IMENKDDPPEIYAAPVFKNKTSTL 825


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 665 GNEGWDWNTVIQYFKKS-ERLDDNHILSSESAXLH 766
           GNE +DW  V+   K+   +   N  L  ES  +H
Sbjct: 733 GNEDFDWGVVVNVSKRPLPKGQSNEYLPQESYIVH 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,258
Number of Sequences: 5004
Number of extensions: 60768
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)