Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L16
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   127   1e-30
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.9  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   6.6  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   8.8  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   8.8  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.8  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   8.8  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  127 bits (307), Expect = 1e-30
 Identities = 72/171 (42%), Positives = 90/171 (52%), Gaps = 1/171 (0%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAERKTW 285
           L  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A     
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66

Query: 286 SQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKK 465
              T P                     +DLFGS                 + Y  KK+ K
Sbjct: 67  ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122

Query: 466 PALIAKSSILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGYGI 618
           P  + KS + LDVKPWDDET M E+E  VR I+M+GL+WG SKLVPVG+G+
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGV 173


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 594 FGGSPEKAFHFNXAYLVFHFLHIGFIIP-WLDIKENR 487
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 247 DYTIVVRGEG*RPAPCQLAQILEHQLEK----ECIQTRSFSQLNIGSSH*XPWAVLTSPT 80
           +Y +VV G G  P  C +   L  QLE     E +    F + ++      P A L S  
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFN 367

Query: 79  AIVSFS 62
            I SFS
Sbjct: 368 RIKSFS 373


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 308 PPVLNPRLPPQQRKTTMTT 364
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYVSGYTPSQADVQVF 189
           L+ +++YL   ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 297 GALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 187
           G L     F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +2

Query: 239 GIIKLLHTLRLNAKHGLRAPAH*PPVLNPRL--------PPQQRKTTMTTTLIYLVLVTR 394
           GI+     LR+N KH LR   H   V+N  L             K     +L+  V   +
Sbjct: 15  GILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQENASMDEKIEKIDSLLSRVSTVK 74

Query: 395 KRMQKLNEFEKNV*KHMLTRSL 460
           K+M+ L++ E    K   +R L
Sbjct: 75  KKMKHLHDCEALFIKQTKSRLL 96


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 448 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 543
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,019
Number of Sequences: 5004
Number of extensions: 41729
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)