Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L16
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   118   3e-27
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   111   3e-25
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   108   3e-24
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    36   0.019

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  118 bits (285), Expect = 3e-27
 Identities = 72/175 (41%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTSAE 273
           L  L++YL  +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+     S  +AE
Sbjct: 33  LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAE 92

Query: 274 RKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADK 453
            +     ++                      VDLFG                  +A A K
Sbjct: 93  GEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVK 146

Query: 454 KSKKPALIAKSSILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGYGI 618
            S K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI
Sbjct: 147 ASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGI 201


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  111 bits (268), Expect = 3e-25
 Identities = 67/174 (38%), Positives = 88/174 (50%), Gaps = 4/174 (2%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWS 288
           L  L Q+L+ K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+  ++     +
Sbjct: 14  LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKA 73

Query: 289 QGTS----PLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKK 456
            G +                          +DLFG                  +  A K 
Sbjct: 74  VGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKA 126

Query: 457 SKKPALIAKSSILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGYGI 618
           S K     KSS+LLDVKPWDDETDMK++E  VR ++MEGL WGASKLVPVGYGI
Sbjct: 127 SSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGI 180


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  108 bits (260), Expect = 3e-24
 Identities = 69/178 (38%), Positives = 88/178 (49%), Gaps = 8/178 (4%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTSAE 273
           L  L++YL  +SY+SGY  S  D+ V+     AP+++  +V RW+  I      S  +A+
Sbjct: 14  LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTAD 73

Query: 274 R---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAY 444
               K  S                          VDLFG                  +A 
Sbjct: 74  GQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAA 127

Query: 445 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGYGI 618
           A K S K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI
Sbjct: 128 AVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGI 185


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 252
           L +LNQ L++KS +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,058,833
Number of Sequences: 37544
Number of extensions: 301453
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)