Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L16
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             160   7e-40
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   2.3  
SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)           28   7.0  
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 27   9.2  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  160 bits (389), Expect = 7e-40
 Identities = 82/173 (47%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
 Frame = +1

Query: 109 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWS 288
           L+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY   ++    
Sbjct: 12  LSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSYGEGKQNFPG 71

Query: 289 QGTSPLX---XXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKS 459
           +  S                         +DLFGS                LKAY +KK+
Sbjct: 72  EKKSVESFGPAGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQERLKAYEEKKA 131

Query: 460 KKPALIAKSSILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGYGI 618
           KK  +IAKS+I+LDVKPWDDETDM EME  VR I+ +GLLWGASKLVP+ YGI
Sbjct: 132 KKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPLAYGI 184


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +1

Query: 157 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 261
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 97  PPRXLNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 204
           P   +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 58  PQFQVNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)
          Length = 450

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -1

Query: 564 FNXAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFLVT 385
           F    L+F F+ +  ++ W    ++     E WF ++L S+     F  +F F    LVT
Sbjct: 324 FTTHNLLFFFILLCMVLDWFQPAKSDTAKTELWFSQILASVL--VAFKFAFPFFSASLVT 381


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 433 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKE 537
           LK  AD   KKP  +    ++ D  P D+E + KE
Sbjct: 76  LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKE 110


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 499 DVKPWDDETDMKEMEN 546
           DV+PWD  TD+ E EN
Sbjct: 653 DVRPWDPLTDLVEYEN 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,224
Number of Sequences: 59808
Number of extensions: 320863
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)