Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L16
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   149   2e-36
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    99   1e-21
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   3.5  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...    27   8.1  
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...    27   8.1  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  149 bits (360), Expect = 2e-36
 Identities = 80/176 (45%), Positives = 103/176 (58%), Gaps = 3/176 (1%)
 Frame = +1

Query: 100 PRXLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAER 276
           P  L   N  LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +ASYT AER
Sbjct: 8   PAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVASYTDAER 67

Query: 277 KTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYAD 450
           KTW+   G++P                      DLFGS                L AYA+
Sbjct: 68  KTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEERLAAYAE 115

Query: 451 KKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGYGI 618
           KK+KK   IAKSS++LDVKPWDDETD+ EME  VR IEM+GL+WG +KL+P+GYGI
Sbjct: 116 KKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGI 171


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =   99 bits (238), Expect = 1e-21
 Identities = 47/83 (56%), Positives = 56/83 (67%)
 Frame = +1

Query: 370 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 549
           DLFGS                L AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 550 VRXIEMEGLLWGASKLVPVGYGI 618
           VR IEM+GL+WG +KL+P+GYGI
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGI 221


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 292 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 134
           P  + C QP CM   + + VV+     PAP Q     + Q +++C+QT+   Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
 Frame = -1

Query: 579 EKAFHFNXAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLV-SICFQTFFSNSFSFC 403
           E    F   + +  FL+I  I     +K++    NE   +R+LV +I    FF  S S  
Sbjct: 278 ELVVQFGIPFFIL-FLYIAVIFKIFAMKKSTLNKNE---IRVLVQAIVIFVFFQASSS-- 331

Query: 402 ILFLVTRTK*INVVVIVVFRCWGGSRGFSTGGQWAGALRPCFAFSRSV*SNLIIPS*YVG 223
            +FL+ +T   N     V +     R  +T   +AGA  PCF+F  S     ++ S  + 
Sbjct: 332 -VFLICQTIAFNTATAFVIK-----RIINTLEIFAGAATPCFSFFTSKEIRKLLSS-KIA 384

Query: 222 KVSGRRLANLL 190
            VS +  +NL+
Sbjct: 385 AVSSQGSSNLV 395


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 292 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 134
           P  + C QP CM   + + VV+     PA  Q     + Q +++C+QT+   Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 487 SILLDVKPWDDETDMKEMENQVRXIEMEGLLWGASKLVPVGY 612
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSY 471


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -1

Query: 570 FHFNXAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFL 391
           FHF+   +++  +     + W  + ++  + +  ++L ++V I    F+  SF+  IL L
Sbjct: 391 FHFDIQLILYAAIFAFLSLTWPSVFKSSNIISNKYYLPVMVRIHVVLFYFGSFASNILPL 450

Query: 390 V 388
           V
Sbjct: 451 V 451


>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 585 SPEKAFHFNXAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVS 445
           SP+K  H           H+GFI P L IKE    G       +LVS
Sbjct: 399 SPQKPLHLMFIAPGKGRFHLGFIAPLLKIKEISDAGGVPVIATILVS 445


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 585 SPEKAFHFNXAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVS 445
           SP+K  H           H+GFI P L IKE    G       +LVS
Sbjct: 399 SPQKPLHLMFIAPGKGRFHLGFIAPLLKIKEISDAGGVPVIATILVS 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,517
Number of Sequences: 27780
Number of extensions: 240790
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)