Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L15
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   2.6  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   3.4  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   5.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.9  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 456 VCSSCLSLFCHHPVSC 409
           VCS CLS+FC   V C
Sbjct: 264 VCSVCLSIFCEPRVHC 279


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = -2

Query: 542 DPNPVCGGERASGLRRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSIKHLL 363
           +P P+C  +  S       +   M A+E+   +   +    + P++ +HS  +TS ++L 
Sbjct: 517 EPCPICQEKFQSVWHEEAEVWVFMNAVEEEGRIFHATCLQEVRPSENKHSNTNTSTQNLA 576

Query: 362 ES 357
           E+
Sbjct: 577 EA 578


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 452 VALVFPSSATILSPADFQHSAFSTSIKHLLESYALQFPANHHTNNVRD 309
           VAL  P +A I+  A  +     TSIK LLE ++L    +H   N R+
Sbjct: 94  VALQLPGAARIIDEASSE-----TSIKQLLERHSLLTKVSHVLINGRN 136


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 276  LSYDIRKHRGGYDILVFLNQY*IGKFTVAR 187
            +SY +RKH+GGY ++   ++Y   K T++R
Sbjct: 1377 ISY-VRKHQGGYGVVAVSDKY--SKQTLSR 1403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,251
Number of Sequences: 5004
Number of extensions: 38526
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)