Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L15
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   4.2  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   4.2  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = -2

Query: 506  GLRRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSIKHLLESYALQFPANHH 327
            G+RR    R +   ++     V  +   +  P   Q ++    + H+  + ++Q P +HH
Sbjct: 2300 GIRRPLVGRPLQRGVDNQAPTV--AQVVVAPPQGMQQASQGPPVLHMQRAVSMQMPTSHH 2357


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = -2

Query: 506  GLRRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSIKHLLESYALQFPANHH 327
            G+RR    R +   ++     V  +   +  P   Q ++    + H+  + ++Q P +HH
Sbjct: 2300 GIRRPLVGRPLQRGVDNQAPTV--AQVVVAPPQGMQQASQGPPVLHMQRAVSMQMPTSHH 2357


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 425 WQKRERQELQTFRSRPSWLAAR--*NGAVRTRVPRHTQG 535
           WQ   + + QT  +RPSW++     N    T  P +++G
Sbjct: 69  WQNSNQNQYQTLYNRPSWISENTGGNNGYATAPPSYSEG 107


>Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical
           protein T03F7.4 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 569 LNDAGELCRDPNPVCGGERASGLRRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSA 390
           L+ +  LC+    +   ER   L+R   L   +  I   V + FP S  +LS     +S 
Sbjct: 218 LHSSFYLCKSTTSLAVSERTKKLKRKYFLSVCIQVIIPIVIMAFPVSYFVLSIVTDYYSQ 277

Query: 389 FSTSIKHLLES 357
            + +   L+ S
Sbjct: 278 MANNFSFLIMS 288


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 512 ASGLRRSTALRAMMAAIEKSVALVFPSSATI 420
           A+ LR  T  RAM + +EK   L+FP+   I
Sbjct: 163 ANILRTGTMARAMKSVLEKRSILIFPNEENI 193


>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -2

Query: 500 RRSTALRAMMAAIEKSVALVFPSSATILSPADFQHSAFSTSI 375
           RR +A  A++ A+ + ++++FP SATI      + + F +SI
Sbjct: 101 RRCSAWIALVMALIRMLSVIFPMSATISKMGKPKGAIFMSSI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,547
Number of Sequences: 27780
Number of extensions: 232330
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)