Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L15
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40630.1 68415.m05011 expressed protein                             30   1.7  
At1g18340.1 68414.m02292 basal transcription factor complex subu...    29   3.9  
At1g21330.1 68414.m02667 hypothetical protein                          28   6.8  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   8.9  

>At2g40630.1 68415.m05011 expressed protein
          Length = 535

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 586 SSTRESSMTRANSAEILTLCVAGNARPDCAVLPRCEP*W 470
           +S+RESS  +ANS E++T   +G+A  D A     +  W
Sbjct: 406 ASSRESSSNQANSLEMVTTNTSGDASSDKAATETHQKRW 444


>At1g18340.1 68414.m02292 basal transcription factor complex
           subunit-related similar to TFIIH basal transcription
           factor complex p34 subunit (Basic transcription factor 2
           34 kDa subunit) (BTF2-p34) (General transcription factor
           IIH polypeptide 3) (SP:Q8VD76) {Mus musculus}; contains
           Pfam PF03850: Transcription factor Tfb4
          Length = 301

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 456 VCSSCLSLFCHHPVSC 409
           +CS CLS+FC H   C
Sbjct: 258 ICSVCLSIFCEHHKKC 273


>At1g21330.1 68414.m02667 hypothetical protein
          Length = 211

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 KRCLMDVENAECWKSAGDR 420
           KR L D E+  CWK  GDR
Sbjct: 3   KRTLTDDEDIVCWKGKGDR 21


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 401  QHSAFSTSIKHLLESYA 351
            QH A +T +KH+LE YA
Sbjct: 1383 QHEALTTRLKHILEMYA 1399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,024
Number of Sequences: 28952
Number of extensions: 214402
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)