Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L14
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    29   3.1  
04_04_0188 - 23433753-23436572                                         28   4.1  
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    28   5.4  
01_06_0495 - 29779499-29781325                                         27   7.2  
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    27   9.5  
01_06_0568 + 30305008-30305170,30305277-30305341,30306599-303067...    27   9.5  

>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
            1772689-1772747,1772816-1772929,1773030-1773238,
            1773347-1774087,1775678-1776238,1776295-1776419,
            1778187-1778317,1779020-1779178,1779471-1779728,
            1780140-1780164,1780531-1780592,1780944-1781003,
            1781112-1781219,1781703-1781838,1781880-1781929,
            1782024-1782096,1782209-1782345,1782441-1782527,
            1782624-1782721,1783259-1783369,1783685-1783769,
            1783880-1783969
          Length = 1259

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 421  GVGGLDLRELGNVCSGGMETIFVSGV 344
            G+GGL   +LG +  GG +T F+S V
Sbjct: 1055 GLGGLSSTDLGGMLGGGSDTSFLSQV 1080


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -2

Query: 340 RLVDLSIEVDVRVLSANLKSLIFGTDVLQYSRFLGCFAIRSFKAKAVTLKADIVKCLLKD 161
           R++D+  E      + N+  ++   D++ ++  + CFA      +AV L   ++   ++ 
Sbjct: 505 RIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQP 564

Query: 160 DSVLTV 143
           DSV  V
Sbjct: 565 DSVALV 570


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 224 DGKTAQESAVL-KNVGTENEALEVRGQYSYVDLDGKVHETTYTADENG 364
           DGK +  S V  KN   +  A ++ G YS++++DG  HE   TA++NG
Sbjct: 713 DGKISDGSNVTSKNYERKFLASKIFGPYSFINVDGG-HE---TAEKNG 756


>01_06_0495 - 29779499-29781325
          Length = 608

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 302 YSYVDLDGKVHETTYTADENGFHPSGADI 388
           YS+++LDG+VH+      ++ +HP  A+I
Sbjct: 557 YSWIELDGEVHKFLV---QDTYHPKSAEI 582


>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 306 EYCPRTSRASFSVPT-FFNTADSW 238
           EYCPRT R  F   T  F   D+W
Sbjct: 601 EYCPRTLRQDFETYTSSFRVDDAW 624


>01_06_0568 +
           30305008-30305170,30305277-30305341,30306599-30306769,
           30307409-30307978,30308085-30308444,30308496-30308774
          Length = 535

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 203 GFGFETSDGKTAQESAVLKNVGTENEALEV 292
           G G+ T DG+  Q SAVL   G     LEV
Sbjct: 479 GLGWHTPDGEQLQRSAVLHFSGPRKPWLEV 508


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,042
Number of Sequences: 37544
Number of extensions: 261920
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)