Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L14
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457357-1|CAG33638.1|  155|Homo sapiens FLJ22578 protein.             29   7.9  
BC072411-1|AAH72411.1|  353|Homo sapiens mitochondrial rRNA meth...    29   7.9  
BC009416-1|AAH09416.2|  155|Homo sapiens MRM1 protein protein.         29   7.9  
AK026231-1|BAB15401.1|  155|Homo sapiens protein ( Homo sapiens ...    29   7.9  
AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.                  29   7.9  
AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.                  29   7.9  

>CR457357-1|CAG33638.1|  155|Homo sapiens FLJ22578 protein.
          Length = 155

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 347 CTSSRGPFHRGRRTSTVREPQEPHFRYRRSSIQQIPGL 234
           C+  +G    G R   +++PQEP  R    S+ Q PGL
Sbjct: 106 CSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQHPGL 143


>BC072411-1|AAH72411.1|  353|Homo sapiens mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) protein.
          Length = 353

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 347 CTSSRGPFHRGRRTSTVREPQEPHFRYRRSSIQQIPGL 234
           C+  +G    G R   +++PQEP  R    S+ Q PGL
Sbjct: 304 CSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQHPGL 341


>BC009416-1|AAH09416.2|  155|Homo sapiens MRM1 protein protein.
          Length = 155

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 347 CTSSRGPFHRGRRTSTVREPQEPHFRYRRSSIQQIPGL 234
           C+  +G    G R   +++PQEP  R    S+ Q PGL
Sbjct: 106 CSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQHPGL 143


>AK026231-1|BAB15401.1|  155|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22578 fis, clone HSI02546. ).
          Length = 155

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 347 CTSSRGPFHRGRRTSTVREPQEPHFRYRRSSIQQIPGL 234
           C+  +G    G R   +++PQEP  R    S+ Q PGL
Sbjct: 106 CSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQHPGL 143


>AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.
          Length = 4957

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 323  GKVHETTYTADENGFHPSGADIPQLPQV*TTNTNEKCSPK*PNKVL 460
            GK   T YT     FHPSG+  P  P   +T  +   SP  P  VL
Sbjct: 1993 GKPQSTNYTVATGNFHPSGS--PLGPSSGSTGESYGLSPLRPPSVL 2036


>AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.
          Length = 5262

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 323  GKVHETTYTADENGFHPSGADIPQLPQV*TTNTNEKCSPK*PNKVL 460
            GK   T YT     FHPSG+  P  P   +T  +   SP  P  VL
Sbjct: 2298 GKPQSTNYTVATGNFHPSGS--PLGPSSGSTGESYGLSPLRPPSVL 2341


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,170,332
Number of Sequences: 237096
Number of extensions: 1441713
Number of successful extensions: 6805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6805
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)