Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L13
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1099 - 8700627-8700710,8701148-8701200,8701287-8701344,870... 48 1e-05
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 33 0.28
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 32 0.64
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609 31 1.1
06_03_0619 + 22801576-22802016,22802111-22802596 31 1.1
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 30 2.6
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926... 30 2.6
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 29 3.4
12_02_1281 + 27523411-27523561,27523725-27523810,27524653-275247... 29 4.5
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 29 4.5
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 29 4.5
08_02_0075 - 11953723-11956203,11958213-11958512 29 5.9
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 29 5.9
04_01_0063 - 630345-633743 29 5.9
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 28 7.8
08_02_1079 + 24190453-24190483,24191201-24191475,24191619-241919... 28 7.8
07_03_1257 - 25241194-25242018 28 7.8
06_03_1061 + 27282979-27286854 28 7.8
05_03_0458 + 14280953-14281866,14281964-14282912 28 7.8
01_06_0930 + 33134385-33138257 28 7.8
>01_01_1099 -
8700627-8700710,8701148-8701200,8701287-8701344,
8701886-8702032,8702386-8702448,8702559-8702630,
8703154-8703234,8703312-8703362,8703519-8703615,
8704154-8704384,8704882-8705142,8705231-8705394,
8705547-8705586,8707223-8707323
Length = 500
Score = 47.6 bits (108), Expect = 1e-05
Identities = 44/151 (29%), Positives = 64/151 (42%)
Frame = +2
Query: 371 LKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRR 550
++ +Y + F EI F E YGL L+ + K L+ LL K+ KA +GTR
Sbjct: 78 VRTIYFESPCAFPEINSFTYETVSTYGLPLETIRSDFKSGLEGLL-KERPTKAIFIGTRI 136
Query: 551 SDPYSENLQFVQKTDANWPQIMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYTSIGST 730
DP + F + L+ I L + +++D YTSIGS
Sbjct: 137 GDPNAVIFLFPCLVALQISIDLLCPILMPIDLSLIDVPRLPINLLLTTVWDYRYTSIGSI 196
Query: 731 TNTWPNPALXHKDCFGCVTYHPAWRLSDASL 823
+T PN L D ++ PA+ LSD L
Sbjct: 197 YDTVPNALLC--DSTTGKSFRPAYMLSDGRL 225
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 397 GTVCRNREIRSRD*NVLWSDVKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSLQREFA 576
G CRN+E+R D + NRRR E T +R NI G L ER ++ E
Sbjct: 135 GLTCRNQELRRED------RTRGNRRRIEKG-TRRVRSSINIVGDLGDGRVERDVREEAG 187
Query: 577 I 579
+
Sbjct: 188 V 188
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 31.9 bits (69), Expect = 0.64
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 458 LKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYS--ENLQFVQKTDANWPQIMRISPL 631
LK+ E ++ E L K L + G S Y+ E + +QK+ N IM I
Sbjct: 1248 LKIIEDQIVENL-----KGSALAIKVTGGHLSGKYNALEWNKILQKSVLNPNDIMTI--- 1299
Query: 632 LNWSYHHIWSYILQRQVPYCSLYDKGY-TSIGSTTNTWPNPALXHKD 769
L SY + +Y LQ+ YCSL+ KGY + W H D
Sbjct: 1300 LRSSYESLPNY-LQQCFTYCSLFPKGYRIDPNRLIHMWAAQGFVHSD 1345
>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
Length = 475
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 611 IMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYTSIGSTTNTWP 745
+++ +P+ N +W+++ VP +L+ +GY SIG T P
Sbjct: 256 LVKWNPVANVDGKDVWTFLRAMDVPVNALHAQGYVSIGCEPCTRP 300
>06_03_0619 + 22801576-22802016,22802111-22802596
Length = 308
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 457 VKSNRRRNEGDVTEAIREGRNIEGRLDGNETERSLQREFAIC 582
VK+ R R +GDV + +R + ++G+L+ + + + R+ C
Sbjct: 77 VKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGC 118
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 753 PXPTRTASVASPTTPPGDYPTRP 821
P PTR A SPT PP PT P
Sbjct: 155 PTPTRPAPSPSPTGPPTPSPTNP 177
>03_02_0534 -
9267297-9267734,9268376-9268649,9268782-9268889,
9269476-9269567,9269652-9269711,9269812-9269994
Length = 384
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 737 CSLCFLSTCTLYRRDCSTALVVAICSSIC 651
CS+CF CT+ R+C + A ++C
Sbjct: 250 CSICFEQACTIEVRECGHQMCAACTLALC 278
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +2
Query: 311 LDITINVLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKET 490
+ + I V K+ +S +GK+ K + + ++IE F+Q+ K+Y + +KV E ++
Sbjct: 350 IQVEILVEKESQRSIILGKDGKAIKMLATASRLDIEDFLQK-KVYLEIMVKVKENWRQDE 408
Query: 491 LQRLLEKDG 517
L LL++ G
Sbjct: 409 L--LLKRYG 415
>12_02_1281 +
27523411-27523561,27523725-27523810,27524653-27524718,
27524801-27524971,27525365-27525535,27525620-27525739,
27525868-27526014,27526193-27526264,27526359-27526832,
27526914-27527086,27527194-27527230
Length = 555
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 490 VTEAIREGRNIEGRLDGNETERSLQREFAI-CSENGCELASDNENISAIELVLSP-HMEL 663
+TE++ E +N+E + +E + +L +FA + A ++++ IE +L+P EL
Sbjct: 93 LTESLLESKNLEAKKINDEKKAALAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAEL 152
Query: 664 HIA 672
+A
Sbjct: 153 KLA 155
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 608 QIMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYT 715
Q I L Y H+ S LQ+ V YCSL+ KGY+
Sbjct: 557 QAYGIMQALKLCYDHL-SNPLQQCVSYCSLFPKGYS 591
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 473 GEMKETLQRLLEKDGI--LKAGLMGTRRSDPYSENLQFVQKTDANWPQIMRISPLLNWSY 646
G +++ ++++ + G L A +G++ S NL K+ N + L WSY
Sbjct: 564 GRLEKIAEKIVNRLGHSPLAASTVGSQLSRNKDINLW---KSALNIENLSEPMKALLWSY 620
Query: 647 HHIWSYILQRQVPYCSLYDKGY 712
+ + S LQR YCSL+ KG+
Sbjct: 621 NKLDSR-LQRCFLYCSLFPKGH 641
>08_02_0075 - 11953723-11956203,11958213-11958512
Length = 926
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 620 ISPLLNWSYHHIWSYILQRQVPYCSLYDKGYT-SIGSTTNTW 742
I P L SY+ + Y LQ YC+++ KGY G TW
Sbjct: 426 IIPALKLSYNQL-PYRLQLLFSYCAMFPKGYNFDKGQLICTW 466
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 632 LNWSYHHIWSYILQRQVPYCSLYDKGYTSI 721
L WSY + LQR YCSL+ KGY I
Sbjct: 435 LLWSYQKL-DPCLQRCFLYCSLFPKGYKYI 463
>04_01_0063 - 630345-633743
Length = 1132
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 638 WSYHHIWSYILQRQVPYCSLYDKGY 712
WSY H+ + L+R YCS++ +GY
Sbjct: 385 WSYQHL-NVQLRRCFAYCSMFPQGY 408
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = -3
Query: 718 RRVPFI--VETAVRHLSLQYVAPYVVIRPVQ*RRYSHYL-RPIRIRFLNKLQILAVRIAP 548
RR F+ V T +RH + V +++ + + ++Y+HYL R + + + L + + P
Sbjct: 79 RRAKFVSCVNTVIRHHAGTGVKSFIIKKNLNNQKYTHYLDRWMYFAVSSGAKELTLDLRP 138
Query: 547 SR-SHQAGLQYS 515
R H +QY+
Sbjct: 139 QRFIHYRNIQYN 150
>08_02_1079 +
24190453-24190483,24191201-24191475,24191619-24191977,
24192066-24192306,24192391-24192603,24192677-24192769,
24192872-24192973,24194104-24194481
Length = 563
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 581 VQKTDANWPQIMRISPLLNWSYHH 652
+Q D NWP SP+++WSY H
Sbjct: 184 LQDNDVNWPP----SPVMDWSYGH 203
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 660 ATYCNDKCRTAVSTIKGTRR*EAQRTRGRIQPXPTRTASVASPTTPPGDYPTRP 821
A+ +CRT +++ TRR +R R + RT + +P PP P +P
Sbjct: 66 ASMTPSRCRTTLASTTTTRRRPPRRLHSRPRHPRGRTTASTTP-QPPRPLPRQP 118
>06_03_1061 + 27282979-27286854
Length = 1291
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 620 ISPLLNWSYHHIWSYILQRQVPYCSLYDKGY 712
+ P+L SY H+ LQR YC+++ +GY
Sbjct: 452 VMPVLLLSYQHL-PLSLQRCFTYCAIFPRGY 481
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 648 TTYGATYCNDKCRTAVSTIKGTRR*EAQRTRGRIQPXPTRTAS-VASPTTPPGDYPTRP 821
++YG T CR A + + T + P T T+S +SP++PP P +P
Sbjct: 15 SSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQP 73
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 581 VQKTDANWPQIMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYT-SIGSTTNTW 742
+ K+ N + L WSY+ + S LQR YCSL+ KG+ I + W
Sbjct: 415 IWKSALNIENLSEPMKALLWSYNKLDSR-LQRCFLYCSLFPKGHKYKIDEMVDLW 468
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,331,769
Number of Sequences: 37544
Number of extensions: 410435
Number of successful extensions: 1302
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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