Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L13
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)         168   5e-42
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    29   4.6  
SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)                    29   6.1  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score =  168 bits (408), Expect = 5e-42
 Identities = 86/204 (42%), Positives = 120/204 (58%)
 Frame = +2

Query: 212 LKEAEQVIRQCFQTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLKVVYIR 391
           LK A  VI++  + + LDE+ + FNGGKDCTVLL I    +       ++ K +  +Y+R
Sbjct: 299 LKGAWAVIQESLKLFRLDELCISFNGGKDCTVLLYIMYAAVAQ--SMAEVPK-INALYVR 355

Query: 392 TKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYSEN 571
              PF E E FV+E    Y L L    G++K  L+ L +    +KA LMGTRR DP++E 
Sbjct: 356 HDSPFKEAENFVEETTRLYNLNLICMSGKIKPALEELKKSHPNIKAILMGTRRHDPFTEK 415

Query: 572 LQFVQKTDANWPQIMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYTSIGSTTNTWPNP 751
           L     TD  WP+ +RI+P+L+W++  +WS +L  +VPYC+LYD GYTS+GS+ NT PNP
Sbjct: 416 LHTFSWTDQGWPEYLRINPILDWNHQDVWSILLHCKVPYCTLYDNGYTSLGSSHNTRPNP 475

Query: 752 ALXHKDCFGCVTYHPAWRLSDASL 823
            L          Y PA+ L D  L
Sbjct: 476 VLR----VNSNEYKPAYLLEDDQL 495


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 599 NWPQIMRISPLLNWSYHHIWSYILQRQVPY--CSLYDKGYT-SIGSTTNTW 742
           NW      S   NWS H+ WS IL     Y  CS Y+   T +  ST N W
Sbjct: 339 NWSTHNNWSTYNNWSTHNNWS-ILNNWSTYDNCSTYNNWSTHNNWSTHNNW 388


>SB_50203| Best HMM Match : DUF371 (HMM E-Value=5.8)
          Length = 349

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +1

Query: 241 MLPNVRIGRGILMFQRRKRLHSIIRHHNKRT*RYLQELR----HREEP*SRLHKDKGTVC 408
           ++ NV   + +L   R+K L+           R+L  +R     + E   R   D  T+ 
Sbjct: 11  VIDNVTRSKNMLTSSRQKYLYFTKETSYGNQTRFLLRIRVSSTRKRENDDRKRNDLKTIS 70

Query: 409 RNREIRSRD*NVLWSDVKSNRRRNEGDVTEA 501
           R  +  +   +V W   K  R  N+G +T++
Sbjct: 71  RVEQFENDTLSVSWGRTKKKRFENDGVITQS 101


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 737 CSLCFLSTCTLYRRDCSTALVVAICS----SICGDKTSSIAEIFS 615
           C L   S C L+ R        +IC     SICG  T SI E+F+
Sbjct: 407 CELFTRSICELFARSICGLFTRSICELFTRSICGLFTRSICELFA 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,074,691
Number of Sequences: 59808
Number of extensions: 495233
Number of successful extensions: 1459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)