Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L13
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 134 7e-32
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 134 7e-32
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 31 0.76
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 31 0.76
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF038609-6|AAK29795.1| 245|Caenorhabditis elegans Hypothetical ... 30 2.3
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 29 3.1
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 29 3.1
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 29 3.1
AC006638-9|AAK85480.1| 271|Caenorhabditis elegans Hypothetical ... 29 3.1
AF016688-7|AAB66080.1| 726|Caenorhabditis elegans Hypothetical ... 29 4.0
U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine r... 29 5.3
L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 28 9.3
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 28 9.3
AF016451-6|AAB66000.2| 379|Caenorhabditis elegans Serpentine re... 28 9.3
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 134 bits (324), Expect = 7e-32
Identities = 69/200 (34%), Positives = 112/200 (56%), Gaps = 1/200 (0%)
Frame = +2
Query: 212 LKEAEQVIRQCFQTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLKVVYIR 391
L EAE ++ + + Y L+++ L FNGGKDCTVLL + + + Y ++ +I
Sbjct: 301 LNEAESIVEEIVEKYPLEQIALSFNGGKDCTVLLHLLRLKVDEKYGP---STPIQGFHIM 357
Query: 392 TKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYSEN 571
+ F E +F+ + +Y + + G +K L L + + LMG+R +DP +
Sbjct: 358 VEDQFPEATQFIIDAAKFYNIQVLEFPGPLKTGLAALKKTRPSIIPVLMGSRATDPNGKY 417
Query: 572 LQF-VQKTDANWPQIMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYTSIGSTTNTWPN 748
++ V+ TD++WPQ++R+ P+LNW+Y +W + VPYC LYD+GYTS+G NT +
Sbjct: 418 MKTPVEWTDSDWPQVLRVCPILNWTYTDVWHMLRGLCVPYCKLYDQGYTSLGGRDNTVKH 477
Query: 749 PALXHKDCFGCVTYHPAWRL 808
PAL G Y PA++L
Sbjct: 478 PALRIVSSDGREHYLPAYKL 497
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 134 bits (324), Expect = 7e-32
Identities = 69/200 (34%), Positives = 112/200 (56%), Gaps = 1/200 (0%)
Frame = +2
Query: 212 LKEAEQVIRQCFQTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLKVVYIR 391
L EAE ++ + + Y L+++ L FNGGKDCTVLL + + + Y ++ +I
Sbjct: 310 LNEAESIVEEIVEKYPLEQIALSFNGGKDCTVLLHLLRLKVDEKYGP---STPIQGFHIM 366
Query: 392 TKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYSEN 571
+ F E +F+ + +Y + + G +K L L + + LMG+R +DP +
Sbjct: 367 VEDQFPEATQFIIDAAKFYNIQVLEFPGPLKTGLAALKKTRPSIIPVLMGSRATDPNGKY 426
Query: 572 LQF-VQKTDANWPQIMRISPLLNWSYHHIWSYILQRQVPYCSLYDKGYTSIGSTTNTWPN 748
++ V+ TD++WPQ++R+ P+LNW+Y +W + VPYC LYD+GYTS+G NT +
Sbjct: 427 MKTPVEWTDSDWPQVLRVCPILNWTYTDVWHMLRGLCVPYCKLYDQGYTSLGGRDNTVKH 486
Query: 749 PALXHKDCFGCVTYHPAWRL 808
PAL G Y PA++L
Sbjct: 487 PALRIVSSDGREHYLPAYKL 506
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Frame = +2
Query: 194 PDVTDVLKEAEQVIRQCFQTYAL----------DEVFLCFNGGKDCTVLLDITINV 331
P V ++ E +++ R C + L DE+ CFN K C V +DI++N+
Sbjct: 262 PGVLAIIAELDKINRDCLKKVVLSGNNITSDVIDEIGACFNSPKMCHVKVDISVNM 317
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Frame = +2
Query: 194 PDVTDVLKEAEQVIRQCFQTYAL----------DEVFLCFNGGKDCTVLLDITINV 331
P V ++ E +++ R C + L DE+ CFN K C V +DI++N+
Sbjct: 299 PGVLAIIAELDKINRDCLKKVVLSGNNITSDVIDEIGACFNSPKMCHVKVDISVNM 354
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/81 (20%), Positives = 37/81 (45%)
Frame = +2
Query: 311 LDITINVLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKET 490
+++ +NV + S G + Y+ G +EK I Y +T G + E
Sbjct: 456 VELGLNVQPYVKTSLSPGSGVVTKYLEASGLLPYLEKIGFNIAGYGCMTCIGNSGPLDEP 515
Query: 491 LQRLLEKDGILKAGLMGTRRS 553
+ + +E++ ++ AG++ R+
Sbjct: 516 VTKAIEENNLVVAGVLSGNRN 536
>AF038609-6|AAK29795.1| 245|Caenorhabditis elegans Hypothetical
protein C54E4.1 protein.
Length = 245
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 361 REEP*SRLHKDKGTVCRNREIRSRD*NVLWSDVKSNRRRNEGDVTEAIREGRNIEGRLDG 540
R P + L+ + T CRN ++ + WSD S R + ++++ +N G +
Sbjct: 30 RSAPATELNARRATSCRNTNRNVKEFSKFWSDAGSINRSKSSN-RASMKQKQNGNGSIRR 88
Query: 541 NETERSLQREFAIC 582
N T+ R + C
Sbjct: 89 NRTQSVDVRRASNC 102
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +1
Query: 439 NVLWSDVKSNRRRNEGDVTEAIR-EGRNIEGRLDGNETERSLQREFAICSENGCELASDN 615
NV W++ ++R R + + R + ++ L G TE N +A +N
Sbjct: 21 NVTWTESDNSRLREKQFLLSCERGDIGSVRKLLAGISTETFNINCLDPLGRNALLIAIEN 80
Query: 616 ENISAIELVLSPHMELHIATTSAVLQSLR*RVHVDRKHNEHVAESSLXPQG 768
ENI IEL+L ++E A A+ + V + +H E + + QG
Sbjct: 81 ENIEMIELLLDHNIETGDAILYAIGEENVEAVEIIVEHLEKMDKFDSERQG 131
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +1
Query: 439 NVLWSDVKSNRRRNEGDVTEAIR-EGRNIEGRLDGNETERSLQREFAICSENGCELASDN 615
NV W++ ++R R + + R + ++ L G TE N +A +N
Sbjct: 21 NVTWTESDNSRLREKQFLLSCERGDIGSVRKLLAGISTETFNINCLDPLGRNALLIAIEN 80
Query: 616 ENISAIELVLSPHMELHIATTSAVLQSLR*RVHVDRKHNEHVAESSLXPQG 768
ENI IEL+L ++E A A+ + V + +H E + + QG
Sbjct: 81 ENIEMIELLLDHNIETGDAILYAIGEENVEAVEIIVEHLEKMDKFDSERQG 131
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +1
Query: 439 NVLWSDVKSNRRRNEGDVTEAIR-EGRNIEGRLDGNETERSLQREFAICSENGCELASDN 615
NV W++ ++R R + + R + ++ L G TE N +A +N
Sbjct: 21 NVTWTESDNSRLREKQFLLSCERGDIGSVRKLLAGISTETFNINCLDPLGRNALLIAIEN 80
Query: 616 ENISAIELVLSPHMELHIATTSAVLQSLR*RVHVDRKHNEHVAESSLXPQG 768
ENI IEL+L ++E A A+ + V + +H E + + QG
Sbjct: 81 ENIEMIELLLDHNIETGDAILYAIGEENVEAVEIIVEHLEKMDKFDSERQG 131
>AC006638-9|AAK85480.1| 271|Caenorhabditis elegans Hypothetical
protein F41G4.1 protein.
Length = 271
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 410 EIEKFVQEIKMYYGLTLKVTEGEMKETLQRLLEKDGILKAGLMGTRRSDPYS 565
++EK + K+ L++ E MK+T +RL+E + ILK L + D S
Sbjct: 210 QLEKKLATDKIVSEEELEIVEQRMKDTNERLVESNRILKNQLQSILQMDDMS 261
>AF016688-7|AAB66080.1| 726|Caenorhabditis elegans Hypothetical
protein F18A12.1 protein.
Length = 726
Score = 29.1 bits (62), Expect = 4.0
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +2
Query: 326 NVLKDIYKSCDIGKNLKVVYIRTKGPFVEIEKFVQEIKMYYGLTLKVTEGEMKETLQRL- 502
NV++ +Y++C+ KN ++ K F E+ K +Q+I + E ++ L
Sbjct: 156 NVMRQVYRTCEGLKNEEIFNANMKTAFRELFKDIQKIGSWPAADKNWDETKLNLNEMLLN 215
Query: 503 LEKDGILKAGLMGTRRSD-PYSE---NLQFVQKTDANWPQIM 616
+ K G GL R ++ P+ E ++ K AN+ QI+
Sbjct: 216 IVKLGSSNFGLFQIRPTEVPFLEVAPDMARSPKVSANFQQII 257
>U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical
protein C06A5.6 protein.
Length = 691
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 463 SNRRRNEGDVTEAIREGRNIEGRLDGNETERSLQREFAICSENGCELASDNENISAI 633
+ R +G TE IRE R++E R GN+ + +N + A + E++ AI
Sbjct: 417 NGRYLEDGRGTEEIREERSVESRQIGNQVVSQASCNYLEARQNSTQTA-NAESVCAI 472
>AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein130 protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 254 YALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLKVVYIR 391
Y L + CFN +VL+D+ L+D + C L + IR
Sbjct: 96 YWLRTNYKCFNSNSHASVLIDLCFIKLRDFARRCSPWLCLSIAMIR 141
>L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical
protein F09G8.5 protein.
Length = 484
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 342 ISLSTFIVMSNNTVQSFPPLKHKNTSSNAYVWKHCL 235
+SL + +S N V+S PL+H Y+ K+CL
Sbjct: 139 MSLLEVLSLSVNEVKSLAPLQHCKNLKEVYLRKNCL 174
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 723 EAQRTRGRIQPXP-TRTASVASPTTPPGDYPT 815
EA++ + QP P + A A+P PP DY T
Sbjct: 191 EARKAKASGQPVPEAKPAPSAAPVAPPKDYST 222
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 248 QTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSC 355
Q+ +D F NGG DC ++ I KD+ ++C
Sbjct: 78 QSLKIDCPFTLKNGGSDCAAIITSFIKHNKDLKEAC 113
>AF016451-6|AAB66000.2| 379|Caenorhabditis elegans Serpentine
receptor, class w protein140 protein.
Length = 379
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Frame = +2
Query: 197 DVTDVLKEAEQVIRQCFQTYALDEVFLCFNGGKDCTVLLDITINVLKDIYKSCDIGKNLK 376
D+ +L E + +++ Y CF G VL ++ + L+D + C L
Sbjct: 84 DICTLLYEMQLIVQSIIFLYTH-----CFQSGSYAWVLFNLVLEALRDYSRRCSTWLCLS 138
Query: 377 VVYIR---TKGPF-VEIEKFVQEIKMYYGLTLKV 466
+ +R K P + + V I +Y +++ V
Sbjct: 139 IALLRILVMKNPLNQKYMRLVNPIGAFYAISIMV 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,895
Number of Sequences: 27780
Number of extensions: 370651
Number of successful extensions: 1166
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -