Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L12
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   6.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.4  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   8.4  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   8.4  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 666 EITECKDQPQVFRRNTRINLEWRIRNLPYPIETY 767
           +I +  ++ Q+   N  +NLEW   NL +    Y
Sbjct: 39  QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY 72


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 666 EITECKDQPQVFRRNTRINLEWRIRNLPYPIETY 767
           +I +  ++ Q+   N  +NLEW   NL +    Y
Sbjct: 39  QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY 72


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 666 EITECKDQPQVFRRNTRINLEWRIRNLPYPIETY 767
           +I +  ++ Q+   N  +NLEW   NL +    Y
Sbjct: 39  QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY 72


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 642 HQVWDHQFLHAIFLHHQVFLSPSKLYVIKLVYLH 541
           H+V+ H  +H     H++    +  + IKL +LH
Sbjct: 82  HKVFQHLMIHRPNWWHELETKFNPHHEIKLQHLH 115


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   GRPMPSPTSLVKISSS 49
           G   P PTS+ KISS+
Sbjct: 69  GALWPQPTSVTKISST 84


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 358 KVSIKQVFRFIVSNR 314
           KVS+++V RF++  R
Sbjct: 80  KVSVEKVIRFLIKER 94


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 358 KVSIKQVFRFIVSNR 314
           KVS+++V RF++  R
Sbjct: 80  KVSVEKVIRFLIKER 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,772
Number of Sequences: 336
Number of extensions: 3618
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)