Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L12
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    32   0.11 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.75 
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    26   7.0  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.3  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 657 HYLK*HQVWDHQFLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 520
           HYL  +   +  F H+  L ++ F +P +L+ + ++  H +P P L
Sbjct: 604 HYLVQNVHLNKDFRHSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 621 FLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 520
           F++   L+HQ+ LS S  ++  L+  H++   FL
Sbjct: 154 FINFFLLYHQIILSHSLFHISHLISFHFLFFSFL 187


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 618 EIGDPIPDAISNSDCAEITECKDQPQVFRRNTRINLEWRIRNLPYP 755
           E GD IP  I N  C E   C +      RN      W    +P P
Sbjct: 312 EDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPPMIPNP 357


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 582 SPSKLYVIKLVYLHYIPLPFLYRLRTYNEFF*LFL 478
           SPS   + K+V+L  + L F+     Y+ F  +FL
Sbjct: 135 SPSSFLLGKIVFLILVDLNFIISQSCYDSFLPIFL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,979
Number of Sequences: 5004
Number of extensions: 58771
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)