Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L12
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54895| Best HMM Match : S1 (HMM E-Value=4.3) 39 0.005
SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4) 33 0.34
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_43261| Best HMM Match : TSP_1 (HMM E-Value=0.0026) 31 1.1
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 30 1.8
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037) 29 3.2
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 4.2
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05) 28 7.4
>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
Length = 479
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 690 PQVFRRNTRINLEWRIRNLPYPIETYSISAN 782
P R++ +WR+RNLPYP+E YS++ +
Sbjct: 1 PIFIRKDVNKAFQWRVRNLPYPLEVYSVTVD 31
>SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)
Length = 393
Score = 32.7 bits (71), Expect = 0.34
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = -3
Query: 675 QLFQHNHYLK*HQVWDHQFLHAIFLH---HQVFLSPSKLYVIKLVYLHYIPLPFLYRLRT 505
Q+FQ YLK HQV+ + H +F H HQVF +L V++ + H + F Y LR
Sbjct: 119 QVFQ---YLKKHQVFQYLKEHQVFQHLKEHQVFQYLKELQVLQYLKEHQV---FQY-LRE 171
Query: 504 YNEFF*LFLP*DMIFQHLVKY 442
+ F +L +FQ+L ++
Sbjct: 172 HQVF--QYLKEHQVFQYLKEH 190
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -3
Query: 675 QLFQHNHYLK*HQVWDHQFLHAIFLH---HQVFLSPSKLYVIKLVYLHYIPLPFLYRLRT 505
QLFQ YLK HQV+ + H +F + HQVF + V + + H + F Y L+
Sbjct: 191 QLFQ---YLKEHQVFQYLKEHQVFQYQKKHQVFQYLKEHQVFQHLKEHQV---FQY-LKE 243
Query: 504 YNEFF*LFLP*DMIFQHLVKY 442
+ F +L +FQHL ++
Sbjct: 244 HQVF--QYLKEHQVFQHLKEH 262
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 315 RLETMKRKTCLIETFESCENYDKKHRNIQSGTATMYKNTIWYHTLLDAEKSCLKEEKVKK 494
R K + L + ++ + HR++QS + K + YH++ D EK +EE+++K
Sbjct: 16 RKRRQKHQEYLNMILQHARDFKEYHRSVQSKIVKLNKAVMNYHSVTDREKK-KEEERIEK 74
>SB_43261| Best HMM Match : TSP_1 (HMM E-Value=0.0026)
Length = 649
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 510 EDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVEI 623
E G E+ + QV ++ AW++ +LG GK H ++
Sbjct: 556 ELGHELAHAPTPNPQVAVKTAWEIPSRLGSAGKRHAQL 593
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 510 EDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVEI 623
E G E+ + QV ++ AW++ +LG GK H ++
Sbjct: 499 ELGHELAHAPTRNPQVAVKTAWEMPSRLGSAGKRHAQL 536
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 510 EDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVE 620
E G E+ + QV ++ AW++ +LG GK H +
Sbjct: 613 ELGHELAHAPTPNPQVAVKTAWEMPSRLGSAGKRHAQ 649
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 510 EDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVE 620
E G E+ + QV ++ AW++ +LG GK H +
Sbjct: 21 ELGHELAHAPTPNPQVAVKTAWEIPSRLGSAGKRHAQ 57
>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
Length = 1127
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 336 KTCLIETFESCENYDKKHRNIQSGTATMYKNTIWYHTLLDAEKSCLKE 479
K L +T + ++ +++ + +Q G +Y +T WY TLL+ + LKE
Sbjct: 590 KDALEKTHQELQDTNERFQLLQVG---VYSSTYWYQTLLNIQFLILKE 634
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 510 EDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVE 620
E G E+ + QV ++ AW++ +LG GK H +
Sbjct: 6 ELGHELAHAPTPNHQVAVKTAWEMPSRLGSAGKRHAQ 42
>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1420
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 636 VWDHQFLHAIFLHHQVFLSPSKLYVI 559
+WD H + H VFLSP +Y++
Sbjct: 558 IWDFAGQHLYYASHPVFLSPRAVYLL 583
>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
Length = 525
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 399 QSGTATMYKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWK 578
QS A + + H +D K KEE V+ YKF G+E+ E L R+ ++
Sbjct: 424 QSNAAAEIWHRRYGHLGVDNLKKLDKEEMVEGFDYKFSKGKEICEPCTKGK--LNRKPFR 481
Query: 579 VKG 587
V+G
Sbjct: 482 VQG 484
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,856,211
Number of Sequences: 59808
Number of extensions: 385107
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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