Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L12
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    29   5.0  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    29   5.0  
AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 594  GGEGKWHVEI-GDPIPDAISNSDCAEITECKD 686
            G + KW V + GDP+P  I   D  EI +C++
Sbjct: 2421 GSQLKWTVRVTGDPMPKVIWMRDGFEIPDCEE 2452


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = +3

Query: 474  KEEKVKKIHYKFEDGREMVEEYNVDTQVLLRRAWKVKGKLGGEGKWHVEIGDPIPDAISN 653
            K +++ +I  K  +  E  E   ++ +    R  ++ GK    G     + D I  ++  
Sbjct: 942  KSDELAEIERKRRESEEK-ERLEIEAKKEAERQREIDGKYDVGGCSFAYLRDTINTSM-- 998

Query: 654  SDCAEITECKDQPQVFRRNTRINLEWRIRNLP 749
             D   +  C+++   FRR  RI  EW+ RN P
Sbjct: 999  -DINLLKACEEE---FRRRLRIYNEWKSRNAP 1026


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 310 LTGSKSTMCNFIIQQYESFLLSFNCFHSFSFXLIHIGGE 194
           LT SKST C+ +++  + F      FH     LI +G E
Sbjct: 276 LTSSKSTACSCLVKLLQQFDNQTGYFHRLDHKLIAMGQE 314


>AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical
           protein Y108F1.3 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 657 DCAEITECKDQPQVFRRNTRINLEWRIRNLPYPIETY 767
           D +E+T    +P +   N  +NL  RIRN P  ++TY
Sbjct: 162 DNSELTRINVEPNIITLNAHLNLLKRIRNDP-ELKTY 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,777
Number of Sequences: 27780
Number of extensions: 322398
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)